{"id":"W1489315571","doi":"10.1111/mmi.12011","title":"<scp>H</scp>fq‐dependent, co‐ordinate control of cyclic diguanylate synthesis and catabolism in the plague pathogen <i><scp>Y</scp>ersinia pestis</i>","year":2012,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Networks of Centres of Excellence of Canada; National Institutes of Health; National Institute of General Medical Sciences; Northwestern University","keywords":"Biology; Biofilm; Messenger RNA; Cell biology; RNA; Pathogen; Microbiology; Biochemistry; Genetics; Gene; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001166016,0.0004760961,0.0006430318,0.0002358059,0.0001306407,0.00004965917,0.0007736884,0.0006275698,0.000008583515],"category_scores_gemma":[0.00139877,0.0004111247,0.000194525,0.0002624984,0.0005344733,0.00002118872,0.0002879207,0.0004496839,0.00005063968],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003397216,"about_ca_system_score_gemma":0.00009768639,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009665255,"about_ca_topic_score_gemma":0.0000462589,"domain_scores_codex":[0.9961702,0.001129524,0.000556435,0.0007355611,0.0001693012,0.001239013],"domain_scores_gemma":[0.9978157,0.0007455213,0.0002701438,0.000832296,0.0001204544,0.0002158459],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003100583,0.0001874891,0.04046093,0.00005398877,0.0001531572,0.00006318097,0.0004787633,0.00001266578,0.9567422,0.00005048583,0.001477916,0.0002882062],"study_design_scores_gemma":[0.001651775,0.0002605176,0.0384609,0.0000319682,0.0001172588,0.0007464542,0.0004483923,0.00001080852,0.9052414,0.00001917691,0.05284496,0.0001663582],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9884637,0.007904496,0.0005174914,0.00009977673,0.0001817381,0.0007082986,0.0008661098,0.00001800932,0.001240357],"genre_scores_gemma":[0.9976718,0.0004550966,0.0001496366,0.0006676817,0.0001334789,0.00009970652,0.000561115,0.00006852182,0.0001928914],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05150079,"threshold_uncertainty_score":0.9998341,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006893839547240144,"score_gpt":0.242411230439613,"score_spread":0.2355173908923729,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}