{"id":"W1493966302","doi":"10.1186/s12866-015-0469-6","title":"Characterization of invasive Neisseria meningitidis strains from Québec, Canada, during a period of increased serogroup B disease, 2009-2013: phenotyping and genotyping with special emphasis on the non-carbohydrate protein vaccine targets","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Institut National de Santé Publique du Québec; Public Health Agency of Canada","funders":"European Commission; University of Oxford; Wellcome Trust","keywords":"Biology; Neisseria meningitidis; Multilocus sequence typing; Neisseria; Bacterial adhesin; Virology; Genotyping; Typing; Antigen; Microbiology; Gene; Genetics; Genotype; Virulence; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000270325,0.0004553422,0.0002457085,0.001078791,0.001259041,0.0006324897,0.0005419597,0.0002868117,0.000875718],"category_scores_gemma":[0.0005746468,0.0001253854,0.0002179414,0.001795036,0.0004559931,0.0001774029,0.0003283817,0.0002946853,0.0001838741],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.007051982,"about_ca_system_score_gemma":0.006585131,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9661182,"about_ca_topic_score_gemma":0.976,"domain_scores_codex":[0.9996389,0.00001174909,0.00001887416,0.00008757204,0.0001474488,0.00009548722],"domain_scores_gemma":[0.9991393,0.0000337449,0.0001328758,0.0000193404,0.0004920811,0.0001825911],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000285818,0.0001138013,0.9519262,0.000118798,0.0000607703,0.0005273724,0.001558876,0.0004388935,0.02944038,0.0000816725,0.001328011,0.01411937],"study_design_scores_gemma":[0.000003846713,0.00007095396,0.9960054,0.00001421298,0.00001587226,0.0002031934,0.0007236821,0.0002551649,0.001363909,0.000004711681,0.001332798,0.000006348222],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933251,0.0004579734,0.0002826008,0.00008133193,0.000008496134,0.00008110784,0.004060741,0.00001005835,0.001692726],"genre_scores_gemma":[0.991504,0.0004633316,0.0007835314,0.0001080562,0.000007747446,0.00002318105,0.00499193,0.000006834854,0.002111303],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03388184,"threshold_uncertainty_score":0.06816268,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01027357589234581,"score_gpt":0.1872714165581141,"score_spread":0.1769978406657683,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}