{"id":"W1501639205","doi":"10.1371/journal.ppat.1005107","title":"Active Transport of Phosphorylated Carbohydrates Promotes Intestinal Colonization and Transmission of a Bacterial Pathogen","year":2015,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Hospital for Sick Children; University of Calgary; Child and Family Research Institute; SickKids Foundation; University of Toronto","funders":"Ontario Ministry of Research and Innovation; Natural Sciences and Engineering Research Council of Canada; CH.I.L.D. Foundation; Canadian Institutes of Health Research; Hospital for Sick Children; Keio University","keywords":"Citrobacter rodentium; Microbiology; Biology; Hexose; Pathogenesis; PEP group translocation; In vivo; Heptose; Bacteria; Pathogen; Mucus; Biochemistry; Escherichia coli; Mutant; Enzyme; Gene; Immunology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001151979,0.0002260515,0.000160664,0.0001040283,0.0001152735,0.0002524744,0.0001566064,0.0002270109,0.0005401341],"category_scores_gemma":[0.0001287255,0.00009220318,0.0001288283,0.00006470058,0.0002003482,0.0001599307,0.0002332468,0.000357006,0.0001221432],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002306021,"about_ca_system_score_gemma":0.0001879753,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007897143,"about_ca_topic_score_gemma":0.0007007979,"domain_scores_codex":[0.9999155,0.00001272338,0.000004089328,0.0000158427,0.00002686228,0.00002507728],"domain_scores_gemma":[0.9998963,0.0000102125,0.0000321168,0.000007780202,0.00001437837,0.00003923828],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006698786,0.00001429789,0.0004824467,0.00001390064,0.000001504898,0.00003710869,0.000008130643,0.00003267901,0.9986172,0.0001084502,0.00001878079,0.0005984344],"study_design_scores_gemma":[0.00001679384,0.0003828096,0.02480019,0.000008645085,0.00001000198,0.0005884199,0.00007069259,0.002505547,0.9694737,0.0001793011,0.0019565,0.000007410445],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976832,0.0003200527,0.001436194,0.00007194859,0.000007028053,0.000004017189,0.00003776683,0.00003055498,0.0004092371],"genre_scores_gemma":[0.9981138,0.000154579,0.001307597,0.00001682945,0.000002976638,0.000002905871,0.00005623364,0.000005986471,0.0003391801],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007897143,"threshold_uncertainty_score":0.001806915,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01574597966680867,"score_gpt":0.2330670248336172,"score_spread":0.2173210451668085,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}