{"id":"W1513327032","doi":"10.1016/s0580-9517(02)31019-5","title":"18 Proteomic analysis of phagosomes","year":2002,"lang":"en","type":"book-chapter","venue":"Methods in microbiology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Phagosome; Biology; Organelle; Endocytic cycle; Endoplasmic reticulum; Cell biology; Proteomics; Computational biology; Gene; Genetics; Endocytosis; Cell; Phagocytosis","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0008008549,0.0002952692,0.0007883865,0.0008609372,0.00002642933,0.000006805084,0.0003747211,0.0009042952,0.003387176],"category_scores_gemma":[0.0001618114,0.0002833648,0.0004058657,0.0001787543,0.0002860233,0.00000132642,0.0002282206,0.0003515327,0.00003276444],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003664315,"about_ca_system_score_gemma":0.00006766163,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001945497,"about_ca_topic_score_gemma":0.00004792281,"domain_scores_codex":[0.9981002,0.0003462766,0.0005742665,0.000616712,0.00006118671,0.0003013149],"domain_scores_gemma":[0.9988382,0.00005943784,0.0002771548,0.0006435629,0.0001308145,0.00005077011],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007123886,0.0000333964,0.0002308788,0.00003832455,0.0009299986,0.00000588664,0.00001847723,0.0000479481,0.9859173,0.000766484,0.0009821171,0.01095798],"study_design_scores_gemma":[0.0006766698,0.0003410729,0.000247458,0.00003985097,0.0003644928,0.0000225899,0.000004804787,0.0001074381,0.5094758,0.000850488,0.4873648,0.0005045704],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"other","genre_gemma":"other","genre_scores_codex":[0.03911599,0.01605407,0.05670056,0.0003133263,0.0008063649,0.003782972,0.001373793,0.00005586573,0.8817971],"genre_scores_gemma":[0.006369338,0.002353081,0.1875565,0.0002331264,0.000197839,0.00009234003,0.001957384,0.000116757,0.8011236],"genre_candidate":"other","genre_consensus":"other","teacher_disagreement_score":0.4863827,"threshold_uncertainty_score":0.9999619,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04758320503214281,"score_gpt":0.3813622258809078,"score_spread":0.333779020848765,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}