{"id":"W1517332226","doi":"10.1371/journal.pone.0129318","title":"Complete Genome Sequence of Sporisorium scitamineum and Biotrophic Interaction Transcriptome with Sugarcane","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Sugarcane Cultivation and Processing","field":"Agricultural and Biological Sciences","cited_by":122,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; Universidade de São Paulo; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Biology; Genetics; Genome; Transcriptome; Gene; Transposable element; Illumina dye sequencing; Whole genome sequencing; Sequence analysis; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002712901,0.001179276,0.0008745319,0.00128081,0.001032239,0.0008476328,0.0004994801,0.0005492501,0.002502337],"category_scores_gemma":[0.0004887578,0.0002424329,0.0007425857,0.00334862,0.000218188,0.0003784015,0.0004661146,0.0008089372,0.001391124],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007219132,"about_ca_system_score_gemma":0.001959595,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01372603,"about_ca_topic_score_gemma":0.01525781,"domain_scores_codex":[0.9996459,0.00001837763,0.00002073084,0.0001283311,0.0001264038,0.00006017867],"domain_scores_gemma":[0.9997255,0.00003622215,0.00005488459,0.00002073087,0.0001098964,0.00005265751],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008989609,0.00007140786,0.005649327,0.00144342,0.0001009181,0.000603606,0.0006664357,0.0009579018,0.9529638,0.0002995296,0.003763658,0.03258102],"study_design_scores_gemma":[0.0001915418,0.0008007342,0.5182099,0.0004743894,0.0009955399,0.002388165,0.00194127,0.008810996,0.23777,0.0009234689,0.2272308,0.0002631265],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6053305,0.006305636,0.02210959,0.0004524698,0.0001647171,0.0005219954,0.3543556,0.001727168,0.009032273],"genre_scores_gemma":[0.2600017,0.003021425,0.03283694,0.000242562,0.00006254098,0.0005685845,0.6956237,0.0005693954,0.007073173],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01372603,"threshold_uncertainty_score":0.02729225,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1871117708703082,"score_gpt":0.2415740027384324,"score_spread":0.05446223186812416,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}