{"id":"W1517332226","doi":"10.1371/journal.pone.0129318","title":"Complete Genome Sequence of Sporisorium scitamineum and Biotrophic Interaction Transcriptome with Sugarcane","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Sugarcane Cultivation and Processing","field":"Agricultural and Biological Sciences","cited_by":122,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; Universidade de São Paulo; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Biology; Genetics; Genome; Transcriptome; Gene; Transposable element; Illumina dye sequencing; Whole genome sequencing; Sequence analysis; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009827431,0.00007956872,0.0001484333,0.00001655598,0.00005201765,0.00002650673,0.00007901725,0.00003186507,0.00007244539],"category_scores_gemma":[0.00002680189,0.00003152006,0.0000128659,0.0002406583,0.00008765833,0.0001543141,0.00001232387,0.00007477913,0.000004636993],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001702445,"about_ca_system_score_gemma":0.000009656838,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001672949,"about_ca_topic_score_gemma":0.00007715997,"domain_scores_codex":[0.9993497,0.00002687301,0.000132052,0.0001580663,0.0002154083,0.0001178979],"domain_scores_gemma":[0.9995967,0.00003700174,0.00007744382,0.00003023484,0.0001665336,0.0000921037],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000068873,0.0001218273,0.01090804,0.00002823118,0.00001652575,0.000001507723,0.000227227,0.00000155594,0.9876317,0.00002732216,0.000002771473,0.0009644043],"study_design_scores_gemma":[0.002574864,0.005597788,0.819743,0.001018068,0.0002687546,0.00009210357,0.006534335,0.001847427,0.1504149,0.0009809182,0.009603325,0.001324497],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983073,0.0001228643,0.000004048148,0.001020559,0.00002402927,0.00009981125,0.00004546301,0.00003124699,0.0003447073],"genre_scores_gemma":[0.9992479,0.0000266247,0.0003608579,0.00009311048,0.00007848605,0.000004674439,0.00007158142,9.05242e-7,0.0001158668],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8372169,"threshold_uncertainty_score":0.1285351,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1871117708703082,"score_gpt":0.2415740027384324,"score_spread":0.05446223186812416,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}