{"id":"W1518855087","doi":"10.1186/s12862-015-0412-3","title":"NarJ subfamily system specific chaperone diversity and evolution is directed by respiratory enzyme associations","year":2015,"lang":"en","type":"article","venue":"BMC Evolutionary Biology","topic":"Metalloenzymes and iron-sulfur proteins","field":"Energy","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Biology; Operon; Subfamily; Genetics; Phylogenetics; Phylogenetic tree; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005367055,0.0002585373,0.0003785554,0.0001557941,0.0008170095,0.00001425787,0.0002444072,0.0003875067,0.0001070828],"category_scores_gemma":[0.00013624,0.0002547996,0.00009927814,0.000307735,0.0002289816,0.0002134937,0.0005464748,0.0001940301,0.0002349912],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008674911,"about_ca_system_score_gemma":0.0001264672,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002161752,"about_ca_topic_score_gemma":0.0001944023,"domain_scores_codex":[0.997674,0.0006021581,0.000408933,0.0005933548,0.0002592657,0.0004622117],"domain_scores_gemma":[0.9987873,0.0001196335,0.0002257124,0.0003761979,0.0002428473,0.0002482795],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003073339,0.0003628195,0.482857,0.00006978929,0.0002178206,0.000009102509,0.001010215,0.0001169671,0.02664081,0.2865044,0.2014634,0.0004403641],"study_design_scores_gemma":[0.002837335,0.0005778397,0.6816998,0.00003327801,0.0000794864,0.00003193604,0.0008822922,0.002923616,0.0003908506,0.003602689,0.3061834,0.0007574903],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9525337,0.02973802,0.004695843,0.0003136584,0.001180764,0.0005736533,0.0006511777,0.0006904633,0.009622735],"genre_scores_gemma":[0.9967184,0.00006801412,0.0008909737,0.0001854367,0.0003671615,0.00003751616,0.0002955285,0.00002448923,0.001412487],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2829017,"threshold_uncertainty_score":0.9999904,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.051369706969412,"score_gpt":0.2357345261358919,"score_spread":0.1843648191664798,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}