{"id":"W1519779150","doi":"10.1371/journal.pone.0131978","title":"Chicken Caecal Microbiome Modifications Induced by Campylobacter jejuni Colonization and by a Non-Antibiotic Feed Additive","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Animal Nutrition and Physiology","field":"Agricultural and Biological Sciences","cited_by":122,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; National Research Council Canada; Cegep de Saint Hyacinthe; Natural Sciences and Engineering Research Council of Canada","funders":"Natural Sciences and Engineering Research Council of Canada; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","keywords":"Campylobacter jejuni; Colonization; Biology; Microbiome; Clostridia; Microbiology; Campylobacter; Campylobacteriosis; Feces; Caecum; Bacteria; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000480135,0.00009390543,0.0001495971,0.000009114922,0.0001115421,0.00003373498,0.00008892488,0.0001126286,0.0001209495],"category_scores_gemma":[0.00003312461,0.00004485284,0.00001853081,0.0001933461,0.00007299182,0.00008266139,0.00003430494,0.00008485048,0.00007334627],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002253753,"about_ca_system_score_gemma":0.000007084575,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001925726,"about_ca_topic_score_gemma":0.00005969844,"domain_scores_codex":[0.9993677,0.00005832929,0.0001174219,0.0002127229,0.00008951317,0.0001542746],"domain_scores_gemma":[0.9996105,0.00005023524,0.00005863974,0.0000332328,0.0001163132,0.0001310118],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003136366,0.0007782298,0.0006391355,0.000003773406,0.00002319181,1.888426e-7,0.00007973042,2.042607e-8,0.9868706,0.00003412423,0.01129309,0.0002465071],"study_design_scores_gemma":[0.003003723,0.005016945,0.4444326,0.0002124124,0.0002537652,0.00001093494,0.001612772,0.0007873843,0.5258054,0.0009137366,0.016532,0.001418344],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962786,0.00005890451,0.000001863029,0.002379408,0.00001494534,0.0002261602,0.0006295451,0.00003517099,0.0003753824],"genre_scores_gemma":[0.9975209,0.00004052712,0.00006690071,0.0004690081,0.00007522964,0.0000104313,0.001488669,0.000001199909,0.0003272],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4610652,"threshold_uncertainty_score":0.1829046,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04935965737825238,"score_gpt":0.2138651759930391,"score_spread":0.1645055186147867,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}