{"id":"W1521806500","doi":"10.1111/1462-2920.12783","title":"‘Ménage à trois’: a selfish genetic element uses a virus to propagate within <scp> <i>T</i> </scp> <i>hermotogales</i>","year":2015,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Agence Nationale de la Recherche; Norges Forskningsråd; Dartmouth College","keywords":"Biology; Horizontal gene transfer; Siphoviridae; Genome; CRISPR; Virus; Plasmid; Bacteria; Gene; Hydrothermal vent; Thermophile; Genetics; Microbiology; Bacteriophage; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001497317,0.0003191385,0.0001622773,0.0002376042,0.0002658678,0.0003601235,0.0002214215,0.0004338273,0.001011996],"category_scores_gemma":[0.0002688184,0.0001762811,0.0002879441,0.0001240571,0.0004496393,0.0004168629,0.0005007705,0.0006082104,0.0003520676],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001888473,"about_ca_system_score_gemma":0.0001791159,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000462977,"about_ca_topic_score_gemma":0.0009055569,"domain_scores_codex":[0.9998574,0.00002272925,0.00001073811,0.00004746887,0.00003352845,0.00002813833],"domain_scores_gemma":[0.9998468,0.00004420283,0.00004388344,0.00002917939,0.000009779411,0.00002616682],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003357118,0.00001864834,0.001247266,0.00003621473,0.000007884684,0.0001584692,0.00008001472,0.00004903822,0.9941029,0.0004630073,0.0000929147,0.003710051],"study_design_scores_gemma":[0.0000115233,0.0005301663,0.01121776,0.0000234289,0.00002688025,0.002521784,0.0002091406,0.001899095,0.9662834,0.0002811274,0.01696893,0.00002680977],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9831668,0.0009514707,0.01230704,0.0001236622,0.00007379296,0.00007170152,0.0001908987,0.0002585866,0.002856087],"genre_scores_gemma":[0.980285,0.0004701572,0.01363791,0.0001253041,0.00001794603,0.00004016621,0.0004742765,0.00007225713,0.00487692],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001011996,"threshold_uncertainty_score":0.003385484,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01019537532773969,"score_gpt":0.2061832883400322,"score_spread":0.1959879130122925,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}