{"id":"W1521806500","doi":"10.1111/1462-2920.12783","title":"‘Ménage à trois’: a selfish genetic element uses a virus to propagate within <scp> <i>T</i> </scp> <i>hermotogales</i>","year":2015,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Agence Nationale de la Recherche; Norges Forskningsråd; Dartmouth College","keywords":"Biology; Horizontal gene transfer; Siphoviridae; Genome; CRISPR; Virus; Plasmid; Bacteria; Gene; Hydrothermal vent; Thermophile; Genetics; Microbiology; Bacteriophage; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002180508,0.0004306676,0.0003540787,0.00006711327,0.0001789277,0.0000617152,0.0004990906,0.0001731408,0.001693187],"category_scores_gemma":[0.00003559917,0.0004080289,0.000133808,0.0001704468,0.0003620991,0.0001852881,0.0008059266,0.0002902695,0.010036],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006328717,"about_ca_system_score_gemma":0.00001888706,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003921698,"about_ca_topic_score_gemma":0.0004840402,"domain_scores_codex":[0.9975393,0.0001859201,0.0005336532,0.0008430596,0.0001307102,0.0007673102],"domain_scores_gemma":[0.9987931,0.00005252501,0.0001931749,0.000497954,0.000003746971,0.0004594631],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002407376,0.0003404264,0.003687998,0.000003539722,0.00003423311,0.00004463958,0.001366505,0.0004568715,0.9586247,0.000002709885,0.03486595,0.0005484063],"study_design_scores_gemma":[0.0009919682,0.0006929477,0.02051654,0.00001607793,0.00005698457,0.0005908295,0.0007184722,0.00002377706,0.3312283,0.00003618455,0.6448263,0.0003016792],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941986,0.0001002095,0.0003076377,0.0001989596,0.000605622,0.0009051252,0.0003373347,0.00009580543,0.003250758],"genre_scores_gemma":[0.9844061,0.00004455288,0.005205306,0.004136652,0.0001189343,0.0001393439,0.0001367061,0.00007158938,0.005740865],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6273964,"threshold_uncertainty_score":0.9998372,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01019537532773969,"score_gpt":0.2061832883400322,"score_spread":0.1959879130122925,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}