{"id":"W1530598392","doi":"10.1186/s13567-015-0192-1","title":"Calves shedding Mycobacterium avium subspecies paratuberculosis are common on infected dairy farms","year":2015,"lang":"en","type":"article","venue":"Veterinary Research","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Agriculture and Agri-Food Canada","keywords":"Mycobacterium avium subspecies paratuberculosis; Paratuberculosis; Feces; Herd; Biology; Veterinary medicine; Indicator bacteria; Animal science; Stock (firearms); Microbiology; Mycobacterium; Fecal coliform; Bacteria; Ecology; Geography; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001888888,0.0003903009,0.0006931475,0.0009295029,0.0003568798,0.0002906353,0.000448738,0.00028679,0.0007583371],"category_scores_gemma":[0.001678817,0.0003233014,0.0002097255,0.001300147,0.0004472465,0.0003445063,0.0006293428,0.001417949,0.001460157],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005832248,"about_ca_system_score_gemma":0.0003659544,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002952896,"about_ca_topic_score_gemma":0.00002464984,"domain_scores_codex":[0.9942148,0.0009059844,0.0004714749,0.0007880062,0.002084023,0.001535756],"domain_scores_gemma":[0.9954871,0.0008956509,0.00008159019,0.001166034,0.0009019569,0.001467699],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.009105905,0.002030696,0.6707307,0.0008639653,0.0002824706,0.005562715,0.001367637,0.000007550392,0.1451908,0.0002861686,0.1618969,0.002674473],"study_design_scores_gemma":[0.003395622,0.0151172,0.8507816,0.0008934771,0.00004701123,0.0005121859,0.001904827,0.0002295309,0.01372744,0.0002256866,0.1125612,0.0006041629],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9757398,0.0004567747,0.000003111945,0.003720174,0.0003682892,0.0008879013,0.00009021284,0.0002306662,0.0185031],"genre_scores_gemma":[0.9959471,0.0005123409,0.0001308006,0.000372719,0.0007828668,0.0003155652,0.0001989776,0.0000861821,0.001653406],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1800509,"threshold_uncertainty_score":0.9999219,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2478786415704499,"score_gpt":0.4369664761344662,"score_spread":0.1890878345640163,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}