{"id":"W1531784797","doi":"10.3389/fmicb.2015.00568","title":"From ingestion to colonization: the influence of the host environment on regulation of the LEE encoded type III secretion system in enterohaemorrhagic Escherichia coli","year":2015,"lang":"en","type":"review","venue":"Frontiers in Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"Medical Research Council","keywords":"Biology; Pathogenicity island; Secretion; Virulence; Type three secretion system; Host (biology); Escherichia coli; Genetics; Cell biology; Microbiology; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000261197,0.0005275292,0.0008615575,0.001166058,0.0002023695,0.0008313741,0.0005234877,0.0009195353,0.001775075],"category_scores_gemma":[0.000397911,0.0002293579,0.0002958206,0.001241641,0.0003517867,0.0009490263,0.0005150627,0.0008078492,0.001086521],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005197783,"about_ca_system_score_gemma":0.0008265226,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007694205,"about_ca_topic_score_gemma":0.001102601,"domain_scores_codex":[0.9998983,0.00001557535,0.00001638284,0.0000231552,0.00003313226,0.00001349553],"domain_scores_gemma":[0.9998628,0.00005144481,0.00002463836,0.000003895552,0.00004029852,0.00001694069],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001457104,0.00005889573,0.0002758794,0.02516768,0.00007259729,0.0003124022,0.0001355475,0.000556102,0.009162217,0.00407461,0.01634813,0.9436904],"study_design_scores_gemma":[0.00001493447,0.000191071,0.001992977,0.0032831,0.0001110571,0.001084533,0.0001391587,0.0001351603,0.002661675,0.001972428,0.9883845,0.00002944467],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0004558205,0.9980891,0.0001046457,0.0002115263,0.0001541129,0.000003011548,0.00001667931,0.000005355043,0.0009596876],"genre_scores_gemma":[0.001299692,0.997871,0.0001030191,0.0001198057,0.00007904445,0.000003910609,0.00002050925,0.000001088769,0.0005018596],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.001775075,"threshold_uncertainty_score":0.005938232,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01419186310560478,"score_gpt":0.2591285427191634,"score_spread":0.2449366796135586,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}