{"id":"W1539909122","doi":"10.1023/a:1024999314839","title":"Evolutionary relationships among photosynthetic bacteria","year":2003,"lang":"en","type":"article","venue":"Photosynthesis Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":84,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"","keywords":"Green sulfur bacteria; Biology; Anoxygenic photosynthesis; Proteobacteria; Purple bacteria; Chloroflexi (class); Bacteria; Chlorosome; Firmicutes; Botany; Genetics; Photosynthesis; Cyanobacteria; Phototroph; Bacteriochlorophyll; Photosynthetic reaction centre; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001518943,0.0001700485,0.0001596188,0.0001423227,0.0005724274,0.00004466739,0.0002794928,0.0001657766,0.0003810082],"category_scores_gemma":[0.001397081,0.0001661017,0.0001075989,0.0002444185,0.000330244,0.000001269868,0.0001383326,0.0002560605,0.00009961048],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003922965,"about_ca_system_score_gemma":0.0001415068,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006899417,"about_ca_topic_score_gemma":0.00008435304,"domain_scores_codex":[0.9975712,0.000816355,0.000234206,0.0004978471,0.0003368229,0.000543533],"domain_scores_gemma":[0.9987437,0.0002330422,0.00004506011,0.0005983413,0.0002275334,0.0001523342],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000497232,0.00009726035,0.03496616,0.00001343611,0.0000758674,0.000002890179,0.00008908547,0.00001785034,0.9616137,0.0005963692,0.002062511,0.0004151869],"study_design_scores_gemma":[0.000293267,0.0001213477,0.07385831,0.00001800825,0.00001358191,0.00001694608,0.0003987977,0.00004080045,0.7046201,0.001327999,0.2190109,0.0002798688],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9750327,0.001381431,0.00003005483,0.00007211038,0.0001122157,0.000338456,0.0000380399,0.000005213846,0.02298981],"genre_scores_gemma":[0.9965284,0.0007214101,0.0008932023,0.00002213208,0.0001049283,0.0001775005,0.00001568991,0.00003943135,0.001497258],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2569935,"threshold_uncertainty_score":0.6773432,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07371648946613746,"score_gpt":0.3048551964766839,"score_spread":0.2311387070105464,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}