{"id":"W1542735222","doi":"10.1080/2159256x.2015.1045116","title":"Unraveling the regulatory network of IncA/C plasmid mobilization: When genomic islands hijack conjugative elements","year":2015,"lang":"en","type":"article","venue":"Mobile Genetic Elements","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Institut National Du Cancer","keywords":"Plasmid; Genome; Biology; Operon; Multiple drug resistance; Antibiotic resistance; Bacteria; Gene; Genetics; Microbiology; Computational biology; Antibiotics; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005600381,0.000248287,0.0002494748,0.00002575057,0.0001130996,0.00002936237,0.0004767934,0.0001389481,0.000116589],"category_scores_gemma":[0.00005396774,0.0002060361,0.00008134072,0.000116024,0.0001960858,0.000005752555,0.0003072805,0.00008510051,0.00002229587],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006635115,"about_ca_system_score_gemma":0.0002214732,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008777376,"about_ca_topic_score_gemma":0.00003175858,"domain_scores_codex":[0.9979081,0.0001725314,0.0007217991,0.0004497697,0.0003393316,0.0004084537],"domain_scores_gemma":[0.9984604,0.00002108479,0.0004173477,0.0007285182,0.0002618161,0.0001109093],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002881568,0.0001513402,0.8504677,0.00005623723,0.000414393,0.00000344822,0.0008282149,0.007846917,0.1067917,0.0000444728,0.02994533,0.003162123],"study_design_scores_gemma":[0.00984518,0.003864416,0.3926717,0.0003285581,0.0004235422,0.00003556325,0.004417749,0.004091784,0.250175,0.003847532,0.328325,0.001974044],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943857,0.001406391,0.001961719,0.00002561525,0.0004029574,0.000810721,0.00004237472,0.00001143475,0.0009531562],"genre_scores_gemma":[0.9919367,0.0002813501,0.005913571,0.0002759491,0.0004160209,0.00007919896,0.0002291165,0.00004604088,0.0008220432],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.457796,"threshold_uncertainty_score":0.8401909,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01316740382175531,"score_gpt":0.2491264639492852,"score_spread":0.2359590601275299,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}