{"id":"W1543996851","doi":"","title":"Modelling prokaryote gene content.","year":2007,"lang":"en","type":"article","venue":"PubMed","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Gene; Prokaryote; Genome; Biology; Horizontal gene transfer; Archaea; Computational biology; Phylogenetic tree; Genetics; Evolutionary biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001109013,0.0007685226,0.0008623152,0.00144472,0.00055808,0.001599062,0.001479631,0.002092228,0.003958595],"category_scores_gemma":[0.007520668,0.0005446645,0.001269236,0.001766825,0.001032248,0.002092494,0.0009281032,0.001008049,0.0009768566],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001918774,"about_ca_system_score_gemma":0.000664725,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008818129,"about_ca_topic_score_gemma":0.006010209,"domain_scores_codex":[0.9994948,0.0001862031,0.00002301498,0.0001507264,0.00008207815,0.000063118],"domain_scores_gemma":[0.997148,0.002159793,0.0002552223,0.0001866947,0.0001260059,0.0001242901],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00007969256,0.00002602872,0.006118043,0.0001058646,0.00006032044,0.0001243996,0.0002037409,0.934117,0.001991599,0.04956513,0.0005096677,0.007098472],"study_design_scores_gemma":[0.00001357317,0.00002085247,0.0008841022,0.00001436767,0.00001747494,0.00007948163,0.00004098952,0.9485449,0.0004849063,0.04778456,0.002100377,0.00001440499],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.393207,0.00241124,0.5843752,0.001220743,0.0001231119,0.00009883931,0.004406129,0.000885169,0.01327265],"genre_scores_gemma":[0.9053679,0.001239635,0.0811113,0.0002000983,0.00004349756,0.0003457962,0.002643867,0.0003434018,0.008704586],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.008818129,"threshold_uncertainty_score":0.0175336,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04554017371511106,"score_gpt":0.2125988369946419,"score_spread":0.1670586632795308,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}