{"id":"W1553029142","doi":"10.1186/1471-2105-8-54","title":"BIRCH: A user-oriented, locally-customizable, bioinformatics system","year":2007,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Genetics, Bioinformatics, and Biomedical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"Genome Prairie; Genome Canada","keywords":"Computer science; Installation; Graphical user interface; Documentation; Software; User interface; Betula pendula; Set (abstract data type); Hierarchy; World Wide Web; Software engineering; Data science; Operating system","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002450439,0.0005704316,0.0005162396,0.0004667859,0.000347025,0.0001832894,0.0009402371,0.0007135095,0.00003854337],"category_scores_gemma":[0.0006516426,0.0004843151,0.0003246614,0.0006908565,0.0005139253,0.00005646702,0.0006598319,0.000423026,0.000854252],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001580893,"about_ca_system_score_gemma":0.0005359909,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000273621,"about_ca_topic_score_gemma":0.0001161288,"domain_scores_codex":[0.9948806,0.00005592958,0.001973023,0.0003390892,0.001235384,0.001516021],"domain_scores_gemma":[0.9967152,0.0001136758,0.000531823,0.001217907,0.0005590803,0.0008623552],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.007059588,0.003220431,0.05047425,0.03750172,0.002948053,0.0002016129,0.0127058,0.006178382,0.02661572,0.02857517,0.3972745,0.4272448],"study_design_scores_gemma":[0.006091177,0.001842029,0.002168094,0.0004380997,0.0001473504,0.000442786,0.01873514,0.3076997,0.02897594,0.00003988263,0.6313137,0.002106049],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.02413418,0.0002864079,0.9311288,0.00007500235,0.001083532,0.001129163,0.0001456674,0.0002129208,0.0418043],"genre_scores_gemma":[0.1355334,0.0008653983,0.852545,0.001853806,0.001531876,0.00007533187,0.001582048,0.0001864019,0.005826708],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.4251387,"threshold_uncertainty_score":0.9999237,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01812585286345034,"score_gpt":0.2676900162113487,"score_spread":0.2495641633478984,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}