{"id":"W1553029142","doi":"10.1186/1471-2105-8-54","title":"BIRCH: A user-oriented, locally-customizable, bioinformatics system","year":2007,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Genetics, Bioinformatics, and Biomedical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"Genome Prairie; Genome Canada","keywords":"Computer science; Installation; Graphical user interface; Documentation; Software; User interface; Betula pendula; Set (abstract data type); Hierarchy; World Wide Web; Software engineering; Data science; Operating system","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007290027,0.002490462,0.002002457,0.005020159,0.001882055,0.004886117,0.008170959,0.00176728,0.04972811],"category_scores_gemma":[0.01192561,0.001977182,0.001017951,0.00385248,0.002163095,0.009795742,0.01077062,0.00511254,0.05476931],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002611523,"about_ca_system_score_gemma":0.005380605,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008082564,"about_ca_topic_score_gemma":0.005990767,"domain_scores_codex":[0.9941831,0.0009757615,0.0003328459,0.001512393,0.002167395,0.0008285336],"domain_scores_gemma":[0.9906157,0.001688617,0.0005240791,0.003179538,0.001760086,0.002231945],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002402229,0.000473251,0.003412694,0.0006531983,0.0001279327,0.000839471,0.0007526358,0.00317898,0.01535229,0.01511388,0.7837932,0.1739002],"study_design_scores_gemma":[0.001890107,0.0008737608,0.01322823,0.0005124606,0.0002966335,0.0019948,0.0004139963,0.08422785,0.04332791,0.03863411,0.8134365,0.001163603],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.003680811,0.0003684648,0.07989922,0.0005104752,0.000236069,0.0004561357,0.003926614,0.8913569,0.0195653],"genre_scores_gemma":[0.152751,0.001914646,0.4745995,0.0063697,0.001260587,0.003189775,0.08907116,0.159803,0.1110409],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.04972811,"threshold_uncertainty_score":0.1663571,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01812585286345034,"score_gpt":0.2676900162113487,"score_spread":0.2495641633478984,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}