{"id":"W1555082803","doi":"10.1186/1742-4690-3-15","title":"HTLV-I antisense transcripts initiating in the 3'LTR are alternatively spliced and polyadenylated","year":2006,"lang":"en","type":"article","venue":"Retrovirology","topic":"T-cell and Retrovirus Studies","field":"Immunology and Microbiology","cited_by":167,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université du Québec à Montréal; Université Laval; Centre hospitalier universitaire de Québec","funders":"Canadian Institutes of Health Research; Centre National de la Recherche Scientifique; Cancer Research Society; Association pour la Recherche sur le Cancer","keywords":"Polyadenylation; Transcription (linguistics); Retrovirus; Exon; Biology; Gene isoform; RNA splicing; Messenger RNA; Long terminal repeat; Antisense RNA; RNA; Alternative splicing; Genetics; Gene; Molecular biology; Virology; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002395969,0.0002249877,0.0003873256,0.0001557807,0.0002756941,0.00001670187,0.0001985917,0.0003054355,0.00004847733],"category_scores_gemma":[0.0000576972,0.0001549009,0.00006814152,0.0001852725,0.0004799954,0.00006116194,0.00005825284,0.0005228426,0.00007482283],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002198252,"about_ca_system_score_gemma":0.00001567024,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00122362,"about_ca_topic_score_gemma":0.0007449773,"domain_scores_codex":[0.9983035,0.0004454239,0.0003421158,0.0003636063,0.00004205092,0.0005032814],"domain_scores_gemma":[0.9993358,0.0002811745,0.0001558828,0.0001860429,0.00002914648,0.00001199696],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001999068,0.0001574295,0.2017176,0.00002359758,0.0001080672,0.0001600611,0.001623622,0.000005496517,0.7914261,0.00204047,0.001149963,0.001387682],"study_design_scores_gemma":[0.003378465,0.0004671194,0.9608572,0.0000319176,0.00007487354,0.0004877645,0.00151029,0.00001366845,0.01944529,0.0006857425,0.01270106,0.0003465853],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9866688,0.008454678,0.00003070393,0.001526975,0.0003535268,0.0002124564,0.00003298534,0.00005568478,0.002664197],"genre_scores_gemma":[0.9981806,0.0002672202,0.00002346943,0.0007795856,0.00007702208,0.00001726322,0.00002918784,0.00001628267,0.0006093941],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7719808,"threshold_uncertainty_score":0.6316674,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01123085807187943,"score_gpt":0.213887283094651,"score_spread":0.2026564250227716,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}