{"id":"W1558207160","doi":"10.1016/j.molcel.2009.10.008","title":"Biased Chromatin Signatures around Polyadenylation Sites and Exons","year":2009,"lang":"en","type":"article","venue":"Molecular Cell","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"National Human Genome Research Institute; National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Nucleosome; Chromatin; Exon; Histone; RNA splicing; Polyadenylation; Genetics; Biology; Histone code; Intron; RNA; Cell biology; DNA; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001887741,0.0001505875,0.0003150922,0.0004454807,0.0003776925,0.0006012634,0.0002218468,0.0003724614,0.003735819],"category_scores_gemma":[0.0005247864,0.0003021162,0.0001961237,0.0002769835,0.0003174446,0.0003515217,0.0004013002,0.0005437774,0.001251907],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001576279,"about_ca_system_score_gemma":0.0001194784,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001981298,"about_ca_topic_score_gemma":0.0006640045,"domain_scores_codex":[0.9997721,0.00002012873,0.00001191624,0.00009839978,0.00005491166,0.00004245753],"domain_scores_gemma":[0.9992667,0.0002150111,0.0001527307,0.0001149622,0.0001117459,0.0001388688],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002838273,0.000007089666,0.004095039,0.00003411205,0.00001322044,0.0001070411,0.00004464875,0.0001030703,0.9910929,0.0008990003,0.00008769631,0.003232422],"study_design_scores_gemma":[0.00005603972,0.0002348602,0.17328,0.00002229784,0.00006993397,0.001893876,0.0002001208,0.002029673,0.8146333,0.002791456,0.004758785,0.00002976117],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9863316,0.0009370818,0.008391564,0.00009625958,0.00005624408,0.000009591325,0.0004535284,0.0001722397,0.003551931],"genre_scores_gemma":[0.9951637,0.0001470675,0.002262258,0.0001243766,0.00004267176,0.00001000105,0.0005168872,0.00005642436,0.001676586],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003735819,"threshold_uncertainty_score":0.01249754,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008321650769971625,"score_gpt":0.247627175270637,"score_spread":0.2393055245006653,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}