{"id":"W1558207160","doi":"10.1016/j.molcel.2009.10.008","title":"Biased Chromatin Signatures around Polyadenylation Sites and Exons","year":2009,"lang":"en","type":"article","venue":"Molecular Cell","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"National Human Genome Research Institute; National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Nucleosome; Chromatin; Exon; Histone; RNA splicing; Polyadenylation; Genetics; Biology; Histone code; Intron; RNA; Cell biology; DNA; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009261299,0.0001143702,0.00008544198,0.00004894186,0.00007820111,0.00005691848,0.00009370285,0.0001093877,0.00001181781],"category_scores_gemma":[0.00004766024,0.0001097445,0.0000486574,0.00007091359,0.00003437506,0.000003720691,0.00003497303,0.00008708821,0.00000764666],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006666095,"about_ca_system_score_gemma":0.0000262402,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001098538,"about_ca_topic_score_gemma":0.00000572057,"domain_scores_codex":[0.9992372,0.0000496359,0.0001031925,0.0002514021,0.0001337916,0.0002247539],"domain_scores_gemma":[0.9996165,0.000007701002,0.00003317212,0.0002101146,0.00003111178,0.0001013726],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002160171,0.0000307951,0.0002851138,0.000007910778,0.000007705185,0.00001963426,0.00001312505,0.00007272064,0.9970838,0.00004793846,0.0005914344,0.001818261],"study_design_scores_gemma":[0.0004149055,0.0003210275,0.00343853,0.000007223838,0.000007991259,0.000005465515,0.00002867508,0.0009094847,0.9927447,0.0001479641,0.001820247,0.000153798],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9915637,0.002922269,0.002529909,0.0002659885,0.00001353887,0.0001333126,0.000004082899,0.0000137495,0.002553491],"genre_scores_gemma":[0.997171,0.00006694053,0.0009960169,0.0005605049,0.00006294285,0.000003819719,0.00009685312,0.00001197533,0.001029931],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005607358,"threshold_uncertainty_score":0.4475252,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008321650769971625,"score_gpt":0.247627175270637,"score_spread":0.2393055245006653,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}