{"id":"W1560958935","doi":"10.1111/j.1365-2567.2011.03538.x","title":"Fine epitope mapping within the pathogenic thyroglobulin peptide 2340–2359: minimal epitopes retaining antigenicity across various MHC haplotypes are not necessarily immunogenic","year":2011,"lang":"en","type":"article","venue":"Immunology","topic":"T-cell and B-cell Immunology","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"General Secretariat for Research and Technology","keywords":"Epitope; Biology; Antigenicity; Thyroglobulin; Major histocompatibility complex; Antigen; Peptide; Epitope mapping; Amino acid; Subdominant; Peptide sequence; Molecular biology; Genetics; Antibody; Biochemistry; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","research_integrity","insufficient_payload"],"consensus_categories":["sts","research_integrity","insufficient_payload"],"category_scores_codex":[0.001726229,0.001088735,0.001585575,0.0002849828,0.002005553,0.0001006809,0.002676923,0.001593397,0.00106046],"category_scores_gemma":[0.0005677218,0.0008531456,0.000681838,0.0006888295,0.002791631,0.0003702501,0.001541906,0.002509366,0.003532113],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001639166,"about_ca_system_score_gemma":0.0003181,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002326216,"about_ca_topic_score_gemma":0.00117162,"domain_scores_codex":[0.9924718,0.001680719,0.001838245,0.001512649,0.000153023,0.002343556],"domain_scores_gemma":[0.995335,0.0007198399,0.001409222,0.002102602,0.0003601554,0.00007311165],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001625322,0.0005487306,0.01378737,0.00002840682,0.002043725,0.0001970059,0.008837909,0.000008768953,0.9641816,0.001412711,0.0004013193,0.006927119],"study_design_scores_gemma":[0.005478397,0.001542258,0.1702498,0.000160106,0.0003876299,0.00264839,0.007871348,0.00001923425,0.771526,0.001291909,0.0370639,0.001761018],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9563674,0.03556115,0.0002116188,0.001064626,0.004278884,0.0007859785,0.0001613951,0.0005370713,0.001031908],"genre_scores_gemma":[0.9934565,0.001068626,0.0005095762,0.0007098402,0.0002003264,0.0001667086,0.0001755995,0.0001440186,0.003568761],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1926556,"threshold_uncertainty_score":0.9999222,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03060058915959496,"score_gpt":0.2361775685032665,"score_spread":0.2055769793436715,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}