{"id":"W1568162366","doi":"10.1186/1471-2148-10-233","title":"Taxonomic distribution and origins of the extended LHC (light-harvesting complex) antenna protein superfamily","year":2010,"lang":"en","type":"article","venue":"BMC Evolutionary Biology","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":176,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Office of Science; Volkswagen Foundation; Joint Genome Institute; Deutsche Forschungsgemeinschaft; U.S. Department of Energy","keywords":"Biology; Phylogenetic tree; Lineage (genetic); Subfamily; Genetics; Evolutionary biology; Phylogenetics; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001634812,0.0001386526,0.0001457088,0.00001905592,0.0001492591,0.000005805389,0.0002265379,0.0001857543,0.000015498],"category_scores_gemma":[0.000204512,0.0001016375,0.00006831955,0.00006908127,0.0002716804,0.000005164558,0.0001957919,0.0001276426,0.000002695783],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001917538,"about_ca_system_score_gemma":0.0001674363,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007411701,"about_ca_topic_score_gemma":0.0001105811,"domain_scores_codex":[0.9991376,0.0000723358,0.0001943014,0.000317998,0.00005121347,0.0002265586],"domain_scores_gemma":[0.9994091,0.00001656234,0.0001215858,0.0003076039,0.00009019948,0.00005495285],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005176327,0.00004531859,0.004387002,0.00002161264,0.00001137412,1.753459e-7,0.000003569987,7.157063e-7,0.9734913,0.02174703,0.00006543448,0.0001747488],"study_design_scores_gemma":[0.0005622477,0.000291416,0.05001835,0.00002194697,0.00002104046,0.0001205794,0.0000473628,0.0006407647,0.8755641,0.003001532,0.06948026,0.0002303971],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9891465,0.0001644427,0.009517906,0.0002047727,0.0002297536,0.0003216118,0.0002162958,0.00001297836,0.0001857366],"genre_scores_gemma":[0.9974781,0.00002115453,0.001929329,0.00005079277,0.0001291186,0.00004769535,0.0002119981,0.00001001035,0.0001217957],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09792715,"threshold_uncertainty_score":0.4144659,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01358681672002526,"score_gpt":0.234539760781128,"score_spread":0.2209529440611027,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}