{"id":"W1570716079","doi":"10.1002/0471142735.im1434s102","title":"Dynamic Quantitative Assays of Phagosomal Function","year":2013,"lang":"en","type":"article","venue":"Current Protocols in Immunology","topic":"Immune cells in cancer","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases; National Heart, Lung, and Blood Institute; National Institutes of Health; U.S. Public Health Service; Wellcome Trust","keywords":"Phagosome; Flow cytometry; Lysosome; Chemistry; Förster resonance energy transfer; Effector; Macrophage; Cell biology; Superoxide; Confocal microscopy; Biophysics; Respiratory burst; Intracellular; Fluorescence; Biochemistry; Biology; In vitro; Molecular biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0003126616,0.0002789164,0.0005429015,0.0003786357,0.00007970515,0.0000117888,0.0004985461,0.0003787067,0.002741436],"category_scores_gemma":[0.000170421,0.000263851,0.0001214,0.0003712242,0.0007068379,0.0002752955,0.0002162124,0.0007899774,0.001824655],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001561209,"about_ca_system_score_gemma":0.0001477093,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001237044,"about_ca_topic_score_gemma":0.00002417009,"domain_scores_codex":[0.9976628,0.0004960296,0.0007892911,0.0004294831,0.00005194513,0.0005704557],"domain_scores_gemma":[0.9985928,0.0002395418,0.0003945618,0.0005506478,0.0002104482,0.00001199241],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007857056,0.0008890697,0.006903555,0.0002057861,0.0002444695,0.000001332546,0.0006135689,0.00002110473,0.8635125,0.01121553,0.001458807,0.1141486],"study_design_scores_gemma":[0.02153224,0.005946723,0.2519975,0.00177713,0.0001150041,0.0001072914,0.001952813,0.0002530862,0.3978881,0.01873524,0.29792,0.001774786],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8033518,0.03212655,0.004986133,0.0003255615,0.01115034,0.1402194,0.00006152976,0.0003394726,0.007439259],"genre_scores_gemma":[0.8772736,0.0001708921,0.0004704016,0.00003268686,0.00001367294,0.1212943,0.0001092505,0.00004333972,0.0005919164],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4656244,"threshold_uncertainty_score":0.9999813,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02816940346044501,"score_gpt":0.3322468635311008,"score_spread":0.3040774600706558,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}