{"id":"W1577971851","doi":"10.1002/hep.27310","title":"Phylogenetic clustering of hepatitis C virus among people who inject drugs in Vancouver, Canada","year":2014,"lang":"en","type":"article","venue":"Hepatology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":72,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Simon Fraser University; St. Paul's Hospital; BC Centre for Disease Control","funders":"National Health and Medical Research Council; Medical Research Council; International AIDS Society; Canadian Institutes of Health Research; Ministry of Health, British Columbia; Simon Fraser University; National Institutes of Health; Canada Research Chairs; Providence Health Care; UNICEF; Australian Government; Gilead Sciences; Michael Smith Health Research BC; ViiV Healthcare; University of British Columbia; World Health Organization; National Institute on Drug Abuse; Bristol-Myers Squibb","keywords":"Phylogenetic tree; Virology; Hepatitis C virus; Medicine; Virus; Biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002966638,0.0001791541,0.0007662136,0.0002674863,0.00004126386,0.000004848122,0.0001807765,0.0001613979,0.0002904423],"category_scores_gemma":[0.0004284804,0.0001848755,0.00005906128,0.0004116339,0.0001370208,0.00004184251,0.0001467933,0.0003166003,0.00001367136],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003116336,"about_ca_system_score_gemma":0.000800978,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9611962,"about_ca_topic_score_gemma":0.9990557,"domain_scores_codex":[0.997911,0.0002685301,0.0005023602,0.0003480671,0.0004058738,0.0005642084],"domain_scores_gemma":[0.9988676,0.0002588766,0.0001091186,0.0004535631,0.0001224201,0.0001884555],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00005824102,0.0000457181,0.9861091,0.0001862839,0.00002527353,0.00007858047,0.0005332815,0.00002739437,0.0007124175,0.00002724159,0.004402525,0.007793894],"study_design_scores_gemma":[0.00159249,0.0003345668,0.9221689,0.0001329189,0.00001988217,0.00002319353,0.00008434003,0.0638902,0.004318151,0.0000527579,0.007159243,0.0002233473],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926653,0.00011342,0.0002495974,0.0001279751,0.000474765,0.0003413228,0.00001860964,0.00002178711,0.005987254],"genre_scores_gemma":[0.9985269,0.0003482974,0.0002563926,0.0003215966,0.00005778212,0.00005172817,0.00001184747,0.0000367067,0.0003887282],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06394023,"threshold_uncertainty_score":0.7539003,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009622125758640803,"score_gpt":0.257430536369375,"score_spread":0.2478084106107342,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}