{"id":"W1582285271","doi":"10.1186/s12864-015-1635-9","title":"Identification of a putative quantitative trait nucleotide in guanylate binding protein 5 for host response to PRRS virus infection","year":2015,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":115,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"National Institute of Food and Agriculture; U.S. Department of Agriculture; Genome Alberta; Alberta Livestock and Meat Agency; Genome Canada; National Pork Board","keywords":"Biology; Quantitative trait locus; Genetics; Single-nucleotide polymorphism; Genotype; Linkage disequilibrium; Expression quantitative trait loci; Allele; Population; RNA splicing; Locus (genetics); Molecular biology; Gene; RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009081488,0.00009947354,0.000157261,0.00006100786,0.0001089228,0.0000281385,0.00008131607,0.00005035723,0.000003553789],"category_scores_gemma":[0.001055858,0.00005298646,0.00005901025,0.0004391838,0.00005009452,0.000115236,0.00004671645,0.00005180698,0.00003169205],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001918161,"about_ca_system_score_gemma":0.00003091736,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008133918,"about_ca_topic_score_gemma":0.006572888,"domain_scores_codex":[0.9990665,0.0001445324,0.0003211942,0.0002188699,0.00008793776,0.0001609132],"domain_scores_gemma":[0.999302,0.0002563089,0.0001824769,0.0000360421,0.0001722217,0.00005096936],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001135281,0.0000667105,0.003425079,0.00000773492,0.000009340875,1.899186e-7,0.001885616,0.0004078333,0.9920901,0.0002951598,0.00002055533,0.0006563778],"study_design_scores_gemma":[0.0005916774,0.002360999,0.4103916,0.00003747517,0.00002215458,0.000001515545,0.00675414,0.0006988324,0.5753894,0.001630103,0.001794092,0.0003279708],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99754,0.00001603816,0.0008079035,0.0001660819,0.00006591502,0.001123882,0.0002127297,0.000027421,0.00004005691],"genre_scores_gemma":[0.9974713,0.000003992803,0.00212917,0.00001225295,0.00002665483,0.0001993945,0.00001153039,0.000001948581,0.0001436956],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4167007,"threshold_uncertainty_score":0.3667826,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09298871907191608,"score_gpt":0.3087051935824884,"score_spread":0.2157164745105724,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}