{"id":"W1582810658","doi":"10.1111/j.1365-2958.2011.07662.x","title":"TP0326, a <i>Treponema pallidum</i>β‐barrel assembly machinery A (BamA) orthologue and rare outer membrane protein","year":2011,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":77,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"Fogarty International Center; National Institute of Allergy and Infectious Diseases","keywords":"Treponema; Biology; Bacterial outer membrane; Bama; Spirochaete; Circular dichroism; Porin; Biogenesis; Antigenicity; Membrane protein; Biochemistry; Escherichia coli; Bacteria; Genetics; Membrane; Virology; Antibody; Syphilis; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001652054,0.0003382227,0.0005682935,0.0001425969,0.00006622588,0.00001454109,0.0001079565,0.0003010736,0.0003072225],"category_scores_gemma":[0.00006633025,0.0002605099,0.0001810934,0.0001152164,0.0001714183,0.00003549012,0.0001325899,0.000230336,0.0001268214],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003870938,"about_ca_system_score_gemma":0.00005224913,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001169533,"about_ca_topic_score_gemma":0.00005377502,"domain_scores_codex":[0.9983351,0.0001684907,0.0003502019,0.0006369669,0.00006480131,0.0004444637],"domain_scores_gemma":[0.9991006,0.00003141776,0.0001129771,0.0005070394,0.00007645031,0.000171474],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002217258,0.0005914565,0.02338453,0.0000824947,0.0003507393,0.004265584,0.0003595969,2.61755e-7,0.9684073,0.0003323498,0.0004453551,0.001558654],"study_design_scores_gemma":[0.005405555,0.001590748,0.03344591,0.0002395301,0.0004772919,0.006003013,0.00007684748,0.000009458899,0.9388281,0.0001816414,0.0131651,0.0005767652],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933058,0.00237058,0.0002238745,0.001084941,0.0001093708,0.0009954273,0.00005734018,0.0000951298,0.001757532],"genre_scores_gemma":[0.9929267,0.00007178648,0.003477372,0.002574639,0.00004386088,0.0002458067,0.0002340323,0.00005093617,0.0003748686],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02957911,"threshold_uncertainty_score":0.9999847,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01943841176133581,"score_gpt":0.2384623237329852,"score_spread":0.2190239119716494,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}