{"id":"W1585534627","doi":"10.1186/1471-2164-6-22","title":"Using purine skews to predict genes in AT-rich poxviruses","year":2005,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"","keywords":"ORFS; Biology; Vaccinia; Genetics; Gene; Virology; Open reading frame; Recombinant DNA; Peptide sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002242855,0.0001594022,0.0002257386,0.0002077546,0.0001392857,0.00001762095,0.000307523,0.0001700235,0.0005356415],"category_scores_gemma":[0.00007953934,0.0001528462,0.00005882054,0.0001547244,0.00007158089,0.00006809768,0.0003432936,0.0001797218,0.002550089],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003216352,"about_ca_system_score_gemma":0.0001469236,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003423559,"about_ca_topic_score_gemma":0.004054966,"domain_scores_codex":[0.9986723,0.0001091312,0.000283943,0.0003033503,0.00003770616,0.0005935882],"domain_scores_gemma":[0.9994792,0.00006738854,0.00004700063,0.0003100949,0.0000302898,0.00006605034],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003803935,0.0001067579,0.04629149,0.00001341927,0.00003914947,0.000006954585,0.0004089863,0.001592511,0.9372379,0.00007586762,0.002464641,0.01138194],"study_design_scores_gemma":[0.00133913,0.00009241456,0.02085523,0.00001294116,0.00001315586,0.00007860229,0.00008824532,0.0001245595,0.4154918,0.00004121038,0.5615965,0.0002661918],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932733,0.004462906,0.0002650852,0.0001284097,0.0002047475,0.0002994265,0.00007014444,0.00004357459,0.001252454],"genre_scores_gemma":[0.9904416,0.0002923778,0.004376964,0.000446291,0.0001920462,0.00001979248,0.00004905681,0.00003457854,0.004147255],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5591318,"threshold_uncertainty_score":0.9982265,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05680945812167366,"score_gpt":0.3032901538016097,"score_spread":0.2464806956799361,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}