{"id":"W1594220350","doi":"10.1128/jb.00337-15","title":"Single-Nucleotide Polymorphisms Found in the <i>migA</i> and <i>wbpX</i> Glycosyltransferase Genes Account for the Intrinsic Lipopolysaccharide Defects Exhibited by Pseudomonas aeruginosa PA14","year":2015,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research","keywords":"Biology; Glycosyltransferase; Epitope; Pseudomonas aeruginosa; Virulence; Lipopolysaccharide; Molecular biology; Microbiology; Gene cluster; Virulence factor; Bacterial outer membrane; Gene; Biochemistry; Antigen; Bacteria; Escherichia coli; Genetics; Immunology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001174024,0.0006027277,0.0002574393,0.0002841614,0.000163777,0.0002004589,0.0003215828,0.0005709211,0.003125796],"category_scores_gemma":[0.0002999513,0.0001694946,0.0004632485,0.0002387076,0.000259746,0.00009054593,0.0001750051,0.0004968011,0.0007413604],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001352594,"about_ca_system_score_gemma":0.0001048802,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004750279,"about_ca_topic_score_gemma":0.000490202,"domain_scores_codex":[0.9998558,0.00002494288,0.00002345662,0.00005046988,0.00002590003,0.00001945249],"domain_scores_gemma":[0.9996276,0.0000866557,0.0001743878,0.00002852091,0.00003185241,0.00005110225],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001320572,0.0002348893,0.07777665,0.0001000264,0.0001854623,0.0009801863,0.00007564002,0.0001944636,0.912903,0.0001230133,0.0001935039,0.005912596],"study_design_scores_gemma":[0.0001508245,0.0009236427,0.737577,0.00005885996,0.0004963651,0.006023709,0.0001596666,0.003277428,0.2485446,0.0002818301,0.002472949,0.00003310718],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974703,0.0001806919,0.001521427,0.00004829797,0.00001204393,0.00002275852,0.0003811401,0.00003523706,0.0003281898],"genre_scores_gemma":[0.9972872,0.00007937502,0.001763141,0.00003893424,0.00001867919,0.00002534371,0.0005531421,0.0000180821,0.000216259],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003125796,"threshold_uncertainty_score":0.0104568,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01753607201991279,"score_gpt":0.2332320082933821,"score_spread":0.2156959362734693,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}