{"id":"W1594350035","doi":"10.1002/path.4516","title":"Multifocal endometriotic lesions associated with cancer are clonal and carry a high mutation burden","year":2015,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Ovarian cancer diagnosis and treatment","field":"Medicine","cited_by":188,"is_retracted":false,"has_abstract":true,"ca_institutions":"Vancouver General Hospital; Canada's Michael Smith Genome Sciences Centre; BC Cancer Agency; University of British Columbia","funders":"Canadian Cancer Society Research Institute; BC Cancer Foundation; VGH and UBC Hospital Foundation","keywords":"Endometriosis; Malignant transformation; ARID1A; Cancer research; Carcinoma; Somatic cell; Mutation; Clear cell carcinoma; Biology; Cancer; Pathology; Medicine; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000413765,0.00007978092,0.0002753819,0.00009826993,0.00004369263,0.000005963394,0.00004042938,0.0000556535,0.00002730625],"category_scores_gemma":[0.000286804,0.00004112343,0.00003162439,0.0001320661,0.00009272288,0.0000346269,0.00001155375,0.000184715,0.000001915706],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001770765,"about_ca_system_score_gemma":0.000207644,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002159506,"about_ca_topic_score_gemma":0.0001738065,"domain_scores_codex":[0.9992716,0.0001513247,0.0001872321,0.00006917815,0.0002019299,0.0001187266],"domain_scores_gemma":[0.9989784,0.0002699229,0.0002830215,0.00007794387,0.0002678987,0.0001227802],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.006696955,0.001873418,0.8580925,0.00008449639,0.0033096,0.02956418,0.0209379,0.00451638,0.004445467,0.0003756161,0.007188196,0.06291526],"study_design_scores_gemma":[0.0123229,0.002909323,0.9714453,0.000336507,0.001484972,0.008543173,0.001734075,0.0001198873,0.0005509527,0.0002024299,0.0002570003,0.00009350363],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9898332,0.002820385,0.0001097019,0.006862071,0.0001839328,0.0001214761,0.00001648832,0.000004963864,0.00004778223],"genre_scores_gemma":[0.9988816,0.0002983299,0.0002627639,0.0002452352,0.0002222451,0.000005383367,0.000003241409,0.000009637395,0.00007153686],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1133528,"threshold_uncertainty_score":0.1676965,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04060636740602221,"score_gpt":0.3029575062931283,"score_spread":0.2623511388871062,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}