{"id":"W1594350035","doi":"10.1002/path.4516","title":"Multifocal endometriotic lesions associated with cancer are clonal and carry a high mutation burden","year":2015,"lang":"en","type":"article","venue":"The Journal of Pathology","topic":"Ovarian cancer diagnosis and treatment","field":"Medicine","cited_by":188,"is_retracted":false,"has_abstract":true,"ca_institutions":"Vancouver General Hospital; Canada's Michael Smith Genome Sciences Centre; BC Cancer Agency; University of British Columbia","funders":"Canadian Cancer Society Research Institute; BC Cancer Foundation; VGH and UBC Hospital Foundation","keywords":"Endometriosis; Malignant transformation; ARID1A; Cancer research; Carcinoma; Somatic cell; Mutation; Clear cell carcinoma; Biology; Cancer; Pathology; Medicine; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003458739,0.000171503,0.0002251481,0.0009820837,0.0003278424,0.0003563917,0.0001540389,0.0002345999,0.00133188],"category_scores_gemma":[0.001439322,0.0001919813,0.0001382766,0.000474455,0.0003316762,0.0002371837,0.0004769949,0.0002276273,0.0001783846],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001980984,"about_ca_system_score_gemma":0.0001961471,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008107743,"about_ca_topic_score_gemma":0.001837853,"domain_scores_codex":[0.9997067,0.00004075878,0.00003230527,0.00006291435,0.00009750788,0.00005988473],"domain_scores_gemma":[0.9990795,0.0001806887,0.0004554063,0.00009101129,0.00007432099,0.0001190867],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003318483,0.00003981407,0.7392918,0.0001389474,0.00008110073,0.007763942,0.0003488823,0.0002229699,0.2208302,0.0005090617,0.0001297351,0.03031162],"study_design_scores_gemma":[0.00002013321,0.0002037317,0.9138894,0.00002581177,0.00006908049,0.05977628,0.0003663587,0.0005698682,0.02225019,0.0005432824,0.002268252,0.00001764122],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977793,0.000950556,0.0006816528,0.00002594723,0.000002273874,0.00001347814,0.00005031447,0.00001201618,0.0004844942],"genre_scores_gemma":[0.9988575,0.0002033065,0.0007492552,0.0000113625,0.000003950154,0.000002933291,0.0000555873,0.000002237674,0.0001139847],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00133188,"threshold_uncertainty_score":0.004455507,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04060636740602221,"score_gpt":0.3029575062931283,"score_spread":0.2623511388871062,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}