{"id":"W1598335893","doi":"10.1111/1462-2920.12196","title":"Homoserine catabolism by <i> <scp>R</scp> hizobium leguminosarum </i> bv. <i>viciae</i> 3841 requires a plasmid‐borne gene cluster that also affects competitiveness for nodulation","year":2013,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; University of Regina","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Homoserine; Rhizobium leguminosarum; Biology; Agrobacterium tumefaciens; Gene cluster; Plasmid; Gene; Mutant; Microbiology; Operon; Rhizobiaceae; Biochemistry; Genetics; Bacteria; Symbiosis; Quorum sensing; Virulence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001798616,0.0004555475,0.0004771826,0.00002355446,0.0003393487,0.00007394791,0.0004617949,0.0003615303,0.0004133777],"category_scores_gemma":[0.00003126424,0.0002411937,0.0002052431,0.0001165382,0.0003502818,0.0003213445,0.0003230486,0.0001818463,0.0005120779],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001300074,"about_ca_system_score_gemma":0.000006053991,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002710425,"about_ca_topic_score_gemma":0.0001057166,"domain_scores_codex":[0.9976727,0.0002013405,0.0003412502,0.0008233376,0.0001133653,0.000847976],"domain_scores_gemma":[0.9987532,0.0006486768,0.0002511178,0.0001709549,0.00001613638,0.0001599462],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001944031,0.0002103136,0.01245894,0.00001216474,0.00004837489,0.000001580982,0.00007489816,0.000001206168,0.9685405,0.00001769614,0.01768092,0.000934002],"study_design_scores_gemma":[0.0007451372,0.0003291629,0.06460635,0.00001615016,0.0000369792,0.00006658415,0.0001908213,0.00001169753,0.8399575,0.00004064343,0.0937476,0.0002513529],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936649,0.0009045932,0.00001591291,0.001304207,0.0004655671,0.001276286,0.0021461,0.000101466,0.0001209988],"genre_scores_gemma":[0.9900429,0.00007191653,0.0003124535,0.002356756,0.0003505741,0.0002924574,0.005415274,0.00001235261,0.001145377],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1285829,"threshold_uncertainty_score":0.9835594,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006248479664029895,"score_gpt":0.1746844816617235,"score_spread":0.1684360019976936,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}