{"id":"W1606995776","doi":"10.1186/s12870-015-0496-3","title":"Seedling development traits in Brassica napus examined by gene expression analysis and association mapping","year":2015,"lang":"en","type":"article","venue":"BMC Plant Biology","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Leibniz-Gemeinschaft; Deutsche Forschungsgemeinschaft; Max-Planck-Gesellschaft; Biotechnology and Biological Sciences Research Council; Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung; Georg-August-Universität Göttingen; University of Warwick","keywords":"Seedling; Biology; Brassica; Candidate gene; Single-nucleotide polymorphism; Gene; Genetics; Genome-wide association study; Quantitative trait locus; Genetic association; Genome; Horticulture; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008240158,0.000119216,0.0002575716,0.00006973073,0.00007728703,0.00002197012,0.0001530884,0.0002627606,0.00001442873],"category_scores_gemma":[0.0002353826,0.00005129267,0.00003169832,0.0004243127,0.00002785639,0.00003473665,0.0001033787,0.0001273601,0.000009560614],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008156895,"about_ca_system_score_gemma":0.00002628199,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001481348,"about_ca_topic_score_gemma":0.002011655,"domain_scores_codex":[0.998584,0.0003487679,0.0002293503,0.0003571947,0.0001213654,0.0003593645],"domain_scores_gemma":[0.999407,0.0003118924,0.0001035351,0.00002820628,0.00003426212,0.000115097],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002486145,0.00001864244,0.3845009,0.000001087691,0.00002116179,0.000003114762,0.000051221,0.000001242739,0.6131533,0.000001886285,0.0002007492,0.002021818],"study_design_scores_gemma":[0.0003836337,0.000105614,0.8744869,0.00001254299,0.00001750786,0.00001306288,0.000136059,0.000230547,0.1172546,0.00003865694,0.007085112,0.0002357807],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989676,0.0002991208,0.000149887,0.0001675781,0.0000356223,0.0001220414,0.0001515769,0.00002726514,0.00007931585],"genre_scores_gemma":[0.9967192,0.0000359945,0.001155684,0.00007701642,0.00004665975,0.00001896477,0.001783487,6.431903e-7,0.0001623163],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4958988,"threshold_uncertainty_score":0.2091655,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04647615860039943,"score_gpt":0.243921564461213,"score_spread":0.1974454058608136,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}