{"id":"W1607551113","doi":"10.1046/j.1365-2958.2003.03322.x","title":"AraC/XylS family members, HilD and HilC, directly activate virulence gene expression independently of HilA in <i>Salmonella typhimurium</i>","year":2003,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":82,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Pathogenicity island; Biology; Gene; Transcription factor; Secretion; Cell biology; Virulence; Transcription (linguistics); Type three secretion system; Genetics; Regulation of gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001437933,0.0004327761,0.0001725862,0.0001702854,0.0001275794,0.0002421377,0.0001095879,0.0001918858,0.001200893],"category_scores_gemma":[0.0001145016,0.0001388384,0.0003599569,0.00007840079,0.000202411,0.000112254,0.0002497956,0.0004703294,0.0004771199],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002805703,"about_ca_system_score_gemma":0.0001780934,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005572296,"about_ca_topic_score_gemma":0.0008298015,"domain_scores_codex":[0.9998415,0.00003682977,0.000008510036,0.00002718808,0.00004129517,0.00004483917],"domain_scores_gemma":[0.9998711,0.00002730561,0.00003023303,0.0000180056,0.00001666083,0.00003652048],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001065096,0.00002033458,0.0003715493,0.00001819341,0.000002578276,0.00002923597,0.000009443444,0.00003436827,0.9986645,0.00004687256,0.00004178075,0.0006545341],"study_design_scores_gemma":[0.00001505296,0.0002562483,0.01336114,0.000005385707,0.00001025446,0.0001441882,0.00003858468,0.0008344211,0.9830831,0.00004459859,0.00220202,0.000005008057],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938177,0.0008646435,0.002372071,0.0001132281,0.00002444469,0.00002255703,0.0004005417,0.000112099,0.002272609],"genre_scores_gemma":[0.9926677,0.000338886,0.002758621,0.0001349891,0.00001004558,0.00003533583,0.001105652,0.00003164947,0.002917028],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001200893,"threshold_uncertainty_score":0.004017353,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009877119982225605,"score_gpt":0.2037174764245347,"score_spread":0.1938403564423092,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}