{"id":"W1607551113","doi":"10.1046/j.1365-2958.2003.03322.x","title":"AraC/XylS family members, HilD and HilC, directly activate virulence gene expression independently of HilA in <i>Salmonella typhimurium</i>","year":2003,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":82,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Pathogenicity island; Biology; Gene; Transcription factor; Secretion; Cell biology; Virulence; Transcription (linguistics); Type three secretion system; Genetics; Regulation of gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005198159,0.0002796568,0.0005323599,0.0000452158,0.00006656896,0.00001215386,0.0002854251,0.0004428863,0.00009723591],"category_scores_gemma":[0.0001262859,0.0001383126,0.0001088781,0.0002756511,0.0002031271,0.00006241464,0.0001359082,0.0002829921,0.00001390973],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002919933,"about_ca_system_score_gemma":0.00001362075,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002294871,"about_ca_topic_score_gemma":0.00006536566,"domain_scores_codex":[0.9975279,0.0007685715,0.0004788478,0.0006504396,0.00007010495,0.0005041237],"domain_scores_gemma":[0.9991906,0.0002816946,0.0002231453,0.0001488015,0.00005250709,0.0001032853],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006848253,0.00008829115,0.02219093,0.000007704867,0.00001372137,0.00003758872,0.00004204575,0.00001195776,0.9761321,0.0001588311,0.0001138605,0.001134498],"study_design_scores_gemma":[0.0003924545,0.000183627,0.03251144,0.00003443944,0.00001336468,0.0001277729,0.00007299823,0.000002849289,0.9575027,0.0006167576,0.00825097,0.0002906537],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952409,0.002851865,0.00002500139,0.0001837266,0.0001603402,0.0002423933,0.00004945476,0.00003081061,0.001215533],"genre_scores_gemma":[0.9980568,0.0004524464,0.0003369532,0.0009790824,0.00002681701,0.0000160573,0.00007603303,0.000003799378,0.00005198834],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01862941,"threshold_uncertainty_score":0.5640222,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009877119982225605,"score_gpt":0.2037174764245347,"score_spread":0.1938403564423092,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}