{"id":"W1607607431","doi":"10.1371/journal.pone.0129629","title":"Pseudomonas aeruginosa MifS-MifR Two-Component System Is Specific for α-Ketoglutarate Utilization","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Core Research for Evolutional Science and Technology; National Institute of Allergy and Infectious Diseases; Herbert Wertheim College of Medicine, Florida International University; National Institute of General Medical Sciences; Directorate for Biological Sciences; Université de Lausanne; Florida International University; National Science Foundation; National Institutes of Health; Concordia University","keywords":"Operon; Biology; Citric acid cycle; Mutant; Pseudomonas aeruginosa; Virulence; Two-component regulatory system; Biofilm; Microbiology; Sigma factor; Biochemistry; Gene; Bacteria; Genetics; Metabolism; Escherichia coli","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001100946,0.0006204814,0.0004409588,0.0003462875,0.0001801889,0.0002775201,0.0003360049,0.0003046775,0.001155773],"category_scores_gemma":[0.0001961626,0.0001704351,0.0004554926,0.0002271698,0.000236938,0.0001836567,0.0004374241,0.0005400314,0.0006740402],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005054135,"about_ca_system_score_gemma":0.0003711152,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002413302,"about_ca_topic_score_gemma":0.002021822,"domain_scores_codex":[0.9996699,0.00003406678,0.00002520792,0.00005484879,0.0001584536,0.00005740291],"domain_scores_gemma":[0.9998447,0.0000208705,0.00005425256,0.00002669927,0.00002303389,0.00003049324],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002731317,0.00001238198,0.0001340218,0.00001950955,0.000001483814,0.00002975933,0.00000590633,0.00001194219,0.9991488,0.00002900451,0.00002600774,0.0005539005],"study_design_scores_gemma":[0.00001607399,0.0002601348,0.01218661,0.000008101323,0.00001589607,0.0009445059,0.00005690197,0.001090801,0.9819047,0.00005342357,0.003447398,0.00001539664],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9901035,0.001019074,0.005440886,0.0002574113,0.00004055029,0.00008241927,0.001169345,0.0003972689,0.001489544],"genre_scores_gemma":[0.9868347,0.0003845003,0.005863299,0.00009056548,0.00001370886,0.00006627113,0.002263002,0.00004695018,0.004436899],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002413302,"threshold_uncertainty_score":0.004798472,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09579869392748173,"score_gpt":0.2567490277601234,"score_spread":0.1609503338326417,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}