{"id":"W1617612940","doi":"10.1007/s13225-015-0345-6","title":"Phylogenetic insights resolve Dacampiaceae (Pleosporales) as polyphyletic: Didymocyrtis (Pleosporales, Phaeosphaeriaceae) with Phoma-like anamorphs resurrected and segregated from Polycoccum (Trypetheliales, Polycoccaceae fam. nov.)","year":2015,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Lichen and fungal ecology","field":"Agricultural and Biological Sciences","cited_by":108,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Museum of Nature","funders":"","keywords":"Polyphyly; Biology; Phoma; Dothideomycetes; Botany; Genus; Pycnidium; Conidium; Evolutionary biology; Phylogenetic tree; Genetics; Clade","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002878621,0.0006833601,0.0008033541,0.0000738175,0.0009295065,0.0001628633,0.0008217921,0.0005250282,0.0007887491],"category_scores_gemma":[0.0001377867,0.000345315,0.0001609249,0.000961875,0.0006219207,0.0004037028,0.001192631,0.0005639316,0.0002946336],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001648493,"about_ca_system_score_gemma":0.0001275759,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02582353,"about_ca_topic_score_gemma":0.01656836,"domain_scores_codex":[0.9961179,0.0004235553,0.0004741514,0.001283277,0.0007449792,0.0009560594],"domain_scores_gemma":[0.9976455,0.0002826908,0.0003644254,0.0003406406,0.0003323777,0.001034367],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00312282,0.0004943055,0.9336945,0.00001597234,0.0002821387,0.0006245226,0.001948713,0.000007435674,0.04593993,0.0002235993,0.007634925,0.00601117],"study_design_scores_gemma":[0.002482939,0.001702456,0.9644355,0.00005326952,0.0002058223,0.00006710919,0.001915963,0.0000918254,0.002949192,0.0005576291,0.02453878,0.0009994968],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9914556,0.003465907,0.000006263552,0.0009003035,0.0006858486,0.0006817158,0.001014015,0.0003147862,0.00147562],"genre_scores_gemma":[0.9957809,0.0002125751,0.0004562037,0.0009802189,0.0004498687,0.00001181807,0.0008446543,0.00001071913,0.00125307],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04299073,"threshold_uncertainty_score":0.9998999,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02061189731318834,"score_gpt":0.1911687533382426,"score_spread":0.1705568560250542,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}