{"id":"W164082874","doi":"","title":"The proteome analyst suite of automated function prediction tools","year":2005,"lang":"en","type":"article","venue":"National Conference on Artificial Intelligence","topic":"Machine Learning in Bioinformatics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Proteome; Gene ontology; Computer science; Function (biology); Suite; Ontology; Sequence (biology); Computational biology; Subcellular localization; Data mining; Bioinformatics; Gene; Biology; Biochemistry; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002498525,0.003495462,0.002185962,0.004995089,0.001155079,0.002342538,0.002767354,0.0009311315,0.009990685],"category_scores_gemma":[0.004302118,0.001280723,0.001776612,0.002635242,0.000351279,0.001575706,0.00216034,0.002549117,0.01593942],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007753031,"about_ca_system_score_gemma":0.002144297,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001785542,"about_ca_topic_score_gemma":0.002309629,"domain_scores_codex":[0.9984279,0.0002585988,0.0001347571,0.0003392261,0.0006995477,0.0001400982],"domain_scores_gemma":[0.9984515,0.0004298287,0.0002239561,0.0002363268,0.0005238225,0.0001345759],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001346298,0.0003457662,0.005776697,0.00252085,0.0007189162,0.0008682749,0.000275856,0.005790191,0.06515,0.01077735,0.7048764,0.2015536],"study_design_scores_gemma":[0.000962971,0.0005321932,0.0148358,0.0004632691,0.0004928385,0.004179321,0.0001914146,0.1585682,0.1251845,0.02901352,0.6651056,0.0004703501],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"software","genre_gemma":"empirical","genre_scores_codex":[0.02789456,0.005517172,0.3757395,0.0009754272,0.0006534201,0.001174268,0.1889919,0.3811068,0.01794691],"genre_scores_gemma":[0.04597794,0.003787179,0.5219476,0.0009635347,0.0003078215,0.002337834,0.3989778,0.01341912,0.0122812],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.009990685,"threshold_uncertainty_score":0.03342217,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05568293676456858,"score_gpt":0.3325883504638718,"score_spread":0.2769054136993032,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}