{"id":"W1641359063","doi":"10.3390/nu7053279","title":"Phylum Level Change in the Cecal and Fecal Gut Communities of Rats Fed Diets Containing Different Fermentable Substrates Supports a Role for Nitrogen as a Factor Contributing to Community Structure","year":2015,"lang":"en","type":"article","venue":"Nutrients","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Canada; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Health Canada","keywords":"Lachnospiraceae; Bacteroidetes; Firmicutes; Biology; UniFrac; Feces; Cecum; Gut flora; Metagenomics; Microbiology; Microbial population biology; Food science; 16S ribosomal RNA; Bacteria; Ecology; Biochemistry; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001318529,0.0002219869,0.0002727952,0.0003654665,0.0001493638,0.0002394774,0.00009767199,0.0002614704,0.0006743387],"category_scores_gemma":[0.0001819472,0.0001551611,0.0001861887,0.0001834009,0.0002522673,0.0001876372,0.0002159966,0.0003229022,0.0001190236],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000129918,"about_ca_system_score_gemma":0.0001696835,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00073076,"about_ca_topic_score_gemma":0.000971915,"domain_scores_codex":[0.9998924,0.00001751137,0.000006739941,0.00003528828,0.00001952001,0.00002844338],"domain_scores_gemma":[0.9998449,0.00001567788,0.00004483842,0.00001042428,0.00002416442,0.00005997572],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008853797,0.00005203961,0.01071279,0.00002755825,0.00002509511,0.00003137541,0.00005132783,0.0000336627,0.9859584,0.00002714394,0.00001790283,0.002177228],"study_design_scores_gemma":[0.00002377796,0.001773793,0.8047912,0.00001658158,0.00008790144,0.0002379335,0.0003245659,0.001009866,0.1908673,0.0002205002,0.0006254257,0.0000211359],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991191,0.0001596892,0.0003601994,0.00002716004,0.000003047348,0.000004218584,0.0001553454,0.000006204661,0.0001649757],"genre_scores_gemma":[0.9974949,0.0002075604,0.001068805,0.00005293715,0.000003473741,0.00002090296,0.0003687534,0.00000626291,0.0007764816],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00073076,"threshold_uncertainty_score":0.002255857,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07070003220960727,"score_gpt":0.3238734995355552,"score_spread":0.2531734673259479,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}