{"id":"W1649415996","doi":"10.1371/journal.pone.0128912","title":"Widespread Distribution and Expression of Gamma A (UMB), an Uncultured, Diazotrophic, γ-Proteobacterial nifH Phylotype","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":81,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Bundesministerium für Bildung und Forschung; Deutsche Forschungsgemeinschaft; Division of Ocean Sciences; Foundation for Research, Science and Technology","keywords":"Phylotype; Diazotroph; Biology; Phylogenetic tree; Proteobacteria; Microbial ecology; Phylum; Botany; Nitrogen fixation; 16S ribosomal RNA; Gene; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001606282,0.00008717056,0.0001706352,0.000008404829,0.0000831475,0.000007464719,0.0001518279,0.0001183911,0.0006719869],"category_scores_gemma":[0.0000990005,0.00007648703,0.00001544462,0.00006133049,0.000228282,0.000157664,0.0002067557,0.0001339953,0.00006445893],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003876756,"about_ca_system_score_gemma":0.000008768136,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002409196,"about_ca_topic_score_gemma":0.0002401491,"domain_scores_codex":[0.999258,0.0002186848,0.0001262334,0.0001543521,0.0001015899,0.0001410983],"domain_scores_gemma":[0.9995407,0.00003029675,0.00007898425,0.0002298425,0.00001801619,0.0001021662],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002792338,0.0006220322,0.01024988,0.00001127829,0.000009183086,8.160925e-7,0.0003722956,0.000008212463,0.9876626,0.0000273759,0.0006259638,0.0001311624],"study_design_scores_gemma":[0.0012155,0.001177632,0.167628,0.00007483574,0.00006648008,0.000004274237,0.00009602727,0.00009872527,0.8244182,0.004080146,0.0008607634,0.0002794074],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992657,0.00001771574,0.00002251864,0.00008182929,0.00003899851,0.000176802,0.0000482392,0.00001997847,0.0003282467],"genre_scores_gemma":[0.9989818,0.00001705699,0.0006186831,0.00003962139,0.00005153682,0.00001094663,0.0002142247,0.000005653277,0.00006047167],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1632443,"threshold_uncertainty_score":0.7357786,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04601082652851915,"score_gpt":0.219475776496333,"score_spread":0.1734649499678139,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}