{"id":"W1649415996","doi":"10.1371/journal.pone.0128912","title":"Widespread Distribution and Expression of Gamma A (UMB), an Uncultured, Diazotrophic, γ-Proteobacterial nifH Phylotype","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":81,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Bundesministerium für Bildung und Forschung; Deutsche Forschungsgemeinschaft; Division of Ocean Sciences; Foundation for Research, Science and Technology","keywords":"Phylotype; Diazotroph; Biology; Phylogenetic tree; Proteobacteria; Microbial ecology; Phylum; Botany; Nitrogen fixation; 16S ribosomal RNA; Gene; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001431297,0.0003318131,0.0001902554,0.0007766792,0.0004282562,0.000394557,0.0001714048,0.0002798668,0.0006016656],"category_scores_gemma":[0.0002597807,0.0001519524,0.0001898747,0.0005261074,0.0003690545,0.0001708356,0.0004293824,0.0002135863,0.0001823948],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000186572,"about_ca_system_score_gemma":0.0002951743,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005602885,"about_ca_topic_score_gemma":0.007608188,"domain_scores_codex":[0.9998417,0.00001143149,0.000009163689,0.000073019,0.00003937446,0.00002531503],"domain_scores_gemma":[0.9996665,0.00004574554,0.0001229204,0.0000223203,0.00007141785,0.00007121531],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001593612,0.00001737275,0.1009644,0.0001274284,0.00003237434,0.0002030946,0.0003722987,0.0001013594,0.8891182,0.00003939271,0.00006916908,0.008795539],"study_design_scores_gemma":[0.000004404317,0.0002348875,0.9257891,0.00002988635,0.00003863556,0.0005876862,0.0006654708,0.0002583051,0.070349,0.00008092621,0.001945573,0.0000161013],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969897,0.0006033418,0.0009605994,0.00002407015,0.000006568976,0.00001257866,0.0005836025,0.00002005276,0.0007993617],"genre_scores_gemma":[0.9958414,0.0005164684,0.001386031,0.00003166668,0.000005693817,0.00001695469,0.0009302591,0.000008583423,0.00126292],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005602885,"threshold_uncertainty_score":0.01114058,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04601082652851915,"score_gpt":0.219475776496333,"score_spread":0.1734649499678139,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}