{"id":"W1668487814","doi":"10.1186/s13059-015-0726-x","title":"Real-time digital pathogen surveillance — the time is now","year":2015,"lang":"en","type":"article","venue":"Genome biology","topic":"Zoonotic diseases and public health","field":"Medicine","cited_by":126,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control","funders":"Medical Research Council","keywords":"Human genetics; Biology; Public health; Public health surveillance; Citizen science; Data science; Computational biology; Genetics; Computer science; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0004286497,0.0001176763,0.0002715371,0.00003560908,0.00004626374,0.00002227827,0.0001531644,0.00009950987,0.001216118],"category_scores_gemma":[0.0001478571,0.0000710988,0.00007342927,0.0001246576,0.0001155238,0.00003329552,0.00007257338,0.00008418233,0.004675505],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005854455,"about_ca_system_score_gemma":0.0004366767,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005966907,"about_ca_topic_score_gemma":0.000001673353,"domain_scores_codex":[0.9990072,0.00007941792,0.0002045304,0.0002426767,0.00009913888,0.0003670651],"domain_scores_gemma":[0.9989427,0.00008599546,0.0000629307,0.0004209138,0.0001122083,0.0003752415],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002070229,0.001323317,0.2709456,0.0002533662,0.0009934084,0.0003145451,0.004528796,0.00001055534,0.04566868,0.004458698,0.4759662,0.1934667],"study_design_scores_gemma":[0.0008359937,0.0005976692,0.05309431,0.000004787366,0.0000179311,0.00007299797,0.00008231101,0.0001459219,0.000004765947,0.0009229346,0.9440746,0.0001457669],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7820227,0.001020221,0.00004400904,0.0226169,0.0003024513,0.0005755225,0.0009464103,0.0001512966,0.1923205],"genre_scores_gemma":[0.9717926,0.0001928476,0.0001772508,0.004927929,0.001161843,0.00002080979,0.001032955,0.0000344073,0.02065939],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4681085,"threshold_uncertainty_score":0.9996969,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02116554465287745,"score_gpt":0.2795482061990406,"score_spread":0.2583826615461632,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}