{"id":"W170240133","doi":"10.1038/npre.2009.3865.1","title":"Genome-scale approach proves that the lungfish-coelacanth sister group is the closest living relative of tetrapods with the BEST program","year":2009,"lang":"en","type":"preprint","venue":"Nature Precedings","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Windsor","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Lungfish; Sister group; Evolutionary biology; Monophyly; Biology; Clade; Taxon; Phylogenetic tree; Zoology; Paleontology; Genetics; Fish <Actinopterygii>; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006323896,0.0005327667,0.0004054535,0.00003755422,0.000387863,0.0001460516,0.001262412,0.0008437794,0.000003247254],"category_scores_gemma":[0.00007190678,0.0002417983,0.0003186196,0.000161477,0.0006434693,0.000003029241,0.00106461,0.001705067,6.383679e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003029947,"about_ca_system_score_gemma":0.00009661332,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002859453,"about_ca_topic_score_gemma":0.00007498671,"domain_scores_codex":[0.9979126,0.0001529232,0.0003020535,0.0008206253,0.0003848745,0.0004269298],"domain_scores_gemma":[0.9980615,0.0001444027,0.0005066171,0.0009965929,0.000236258,0.00005466869],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002330172,0.005396311,0.1328712,0.003300001,0.01824924,0.000009469607,0.1089302,0.001571172,0.5892549,0.003601952,0.02354234,0.110943],"study_design_scores_gemma":[0.00231126,0.006640953,0.4869945,0.001694658,0.004588219,0.0001953328,0.01947395,0.0006299495,0.09121291,0.003646817,0.3781092,0.004502296],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9450442,0.02899864,0.0003530323,0.004119941,0.0003371763,0.003699894,0.0001462388,0.0000196287,0.01728131],"genre_scores_gemma":[0.9924154,0.001946454,0.003185579,0.0006956372,0.0005561126,0.0004220673,0.00006258289,0.00005893067,0.0006572752],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.498042,"threshold_uncertainty_score":0.986025,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01012784615082821,"score_gpt":0.2462237111476683,"score_spread":0.2360958649968401,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}