{"id":"W1712795757","doi":"10.1016/j.protis.2005.04.001","title":"Gene Discovery in the Genome","year":2005,"lang":"en","type":"article","venue":"Protist","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Atlantic Canada Opportunities Agency","keywords":"Biology; Genome; Computational biology; Evolutionary biology; Gene; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000486614,0.0002501674,0.0004307983,0.001125462,0.0006426435,0.001400438,0.0004421439,0.001029573,0.001219619],"category_scores_gemma":[0.0008534071,0.0002246729,0.0004809281,0.001545703,0.0005715518,0.001086235,0.0005488587,0.001135684,0.0005588926],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001348733,"about_ca_system_score_gemma":0.001200319,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001632259,"about_ca_topic_score_gemma":0.002290456,"domain_scores_codex":[0.9997533,0.0000317085,0.000009880994,0.00009058741,0.0000688115,0.00004571911],"domain_scores_gemma":[0.9996054,0.0001038858,0.00004375543,0.00005595364,0.00009798868,0.00009318722],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008061139,0.0000914925,0.01813221,0.001265657,0.0001892353,0.001936408,0.0006194398,0.001796394,0.7097685,0.04863834,0.01298805,0.2037682],"study_design_scores_gemma":[0.0001109619,0.0003553126,0.07477117,0.0005252172,0.000363743,0.003640048,0.0009245251,0.008424021,0.3123358,0.05314651,0.5453064,0.0000962538],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7841777,0.09974626,0.04363391,0.02312818,0.001884862,0.00008875073,0.007963139,0.001074205,0.03830288],"genre_scores_gemma":[0.868898,0.04105982,0.06052998,0.004114102,0.0006783492,0.00004766342,0.008283912,0.0001570172,0.01623123],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001632259,"threshold_uncertainty_score":0.009785771,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009059992648109996,"score_gpt":0.2195082186108541,"score_spread":0.2104482259627441,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}