{"id":"W1725610956","doi":"10.1099/mic.0.000174","title":"Quantification of type VI secretion system activity in macrophages infected with Burkholderia cenocepacia","year":2015,"lang":"en","type":"article","venue":"Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Cystic Fibrosis Trust; Cystic Fibrosis Canada","keywords":"Type VI secretion system; Biology; Secretion; Virulence; Cytoskeleton; Effector; Microbiology; Mutant; Burkholderia cenocepacia; Cell biology; Gene; Phenotype; Gene cluster; Genetics; Cell; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002082324,0.0001081846,0.0001883557,0.00006435806,0.00002202162,0.000006585647,0.00009770745,0.0001395797,0.000004290142],"category_scores_gemma":[0.00008783889,0.00008925194,0.00002006955,0.0001563344,0.0001404012,0.000003743074,0.00006529255,0.00006613148,0.00001005266],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004621379,"about_ca_system_score_gemma":0.0001045013,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000124615,"about_ca_topic_score_gemma":0.0002277449,"domain_scores_codex":[0.9991974,0.0001864361,0.0001392136,0.0002482189,0.00003391878,0.0001947668],"domain_scores_gemma":[0.9994186,0.00000974677,0.00009444006,0.0002226626,0.0002178274,0.00003668305],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005133169,0.00004385173,0.008460164,0.00005065527,0.00003822135,0.000002740989,0.00005479368,0.00002460637,0.9904528,0.00002507504,0.0002072282,0.0001266088],"study_design_scores_gemma":[0.0007902356,0.0007835444,0.02398811,0.00002621605,0.000007865193,0.00003193027,0.0001294162,0.00003497283,0.9724293,0.000002210609,0.00165984,0.0001164034],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987442,0.0002358749,0.0004068407,0.00004925657,0.0001038949,0.00020263,0.00003723228,0.00001285053,0.0002072302],"genre_scores_gemma":[0.9993864,0.00003710555,0.0001833953,0.000007386423,0.00003826347,0.00001283968,0.0002568026,0.0000114739,0.00006637282],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01802348,"threshold_uncertainty_score":0.3639588,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02105894987997526,"score_gpt":0.2702482400430682,"score_spread":0.249189290163093,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}