{"id":"W1747642895","doi":"10.1128/iai.00415-15","title":"Parasite Manipulation of the Invariant Chain and the Peptide Editor H2-DM Affects Major Histocompatibility Complex Class II Antigen Presentation during Toxoplasma gondii Infection","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Toxoplasma gondii Research Studies","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Carleton University; Ste. Anne's Hospital","funders":"National Cancer Institute","keywords":"Biology; CD74; Antigen presentation; Major histocompatibility complex; Antigen processing; Antigen; Immunology; MHC class II; MHC class I; Toxoplasma gondii; Virology; T cell; Immune system; Antibody","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001142389,0.0001829057,0.0002929351,0.000120072,0.001207079,0.00003437811,0.0001007645,0.0001644524,0.00003021298],"category_scores_gemma":[0.0007019603,0.0001191327,0.0000777593,0.0002343727,0.0007276469,0.0002499927,0.0003931899,0.0004711918,0.000009702938],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001602761,"about_ca_system_score_gemma":0.00005120378,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007375672,"about_ca_topic_score_gemma":0.003498691,"domain_scores_codex":[0.9976,0.001532384,0.000310974,0.0002240064,0.0001017289,0.000230948],"domain_scores_gemma":[0.9988277,0.0003331156,0.0002780444,0.000343147,0.0001840376,0.00003395248],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001277048,0.0002973157,0.8221623,0.0001776099,0.0003309602,4.983257e-7,0.005667673,0.0001404919,0.1639611,0.0006691723,0.004175099,0.001140781],"study_design_scores_gemma":[0.003597195,0.0002053761,0.96721,0.0000350845,0.00004435903,0.00004468916,0.0002119384,0.0002930005,0.0238463,0.0002933657,0.004095947,0.000122751],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960787,0.0002196372,0.0001009443,0.0005248155,0.001402712,0.001136807,0.00001544476,0.00005935419,0.0004615353],"genre_scores_gemma":[0.9990215,0.0001519931,0.00001261232,0.00002666839,0.0001338994,0.00007704723,0.00004107029,0.00001035927,0.0005248925],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1450477,"threshold_uncertainty_score":0.9992343,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03371188477807991,"score_gpt":0.2839502442768183,"score_spread":0.2502383594987383,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}