{"id":"W1761291524","doi":"10.1016/j.ydbio.2015.09.004","title":"The Xenopus ORFeome: A resource that enables functional genomics","year":2015,"lang":"en","type":"article","venue":"Developmental Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Cancer Institute; National Institutes of Health; Cancer Research UK; Wellcome Trust; Wellcome","keywords":"Biology; Xenopus; Functional genomics; Computational biology; Resource (disambiguation); Genomics; Genetics; Genome; Gene; Computer science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002710153,0.00015371,0.0001143428,0.00002237542,0.0002653459,0.00002381547,0.0002198572,0.0001183269,0.000007295903],"category_scores_gemma":[0.00006209323,0.0001092827,0.000046848,0.00005123142,0.0002059078,5.35011e-7,0.0003320409,0.00006238873,0.00004474628],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005198356,"about_ca_system_score_gemma":0.0002021981,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000151257,"about_ca_topic_score_gemma":0.00006505199,"domain_scores_codex":[0.9991067,0.00005681678,0.000164872,0.0002949707,0.00006877584,0.0003078409],"domain_scores_gemma":[0.9995945,0.00002792496,0.00006132745,0.0001689311,0.00005561558,0.00009172011],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003675516,0.00004997449,0.05655088,0.000004393609,0.0003517074,0.000003592827,0.0003834282,0.00004281633,0.8713561,0.001303156,0.05619767,0.01338874],"study_design_scores_gemma":[0.0004153503,0.0001206307,0.006671255,0.000001078953,0.000006086004,0.00005193931,0.0008396499,0.000002854202,0.06336085,0.0006368539,0.9277221,0.0001713855],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9879123,0.003969061,0.0001554145,0.0004815947,0.0004969168,0.0001444952,0.00002715122,0.000006726091,0.006806362],"genre_scores_gemma":[0.9951029,0.0004333055,0.001249882,0.000677508,0.000262343,0.00004258997,0.0001793998,0.0000180738,0.002034019],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8715244,"threshold_uncertainty_score":0.4456417,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03156160937541217,"score_gpt":0.2238985040140161,"score_spread":0.192336894638604,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}