{"id":"W1766136822","doi":"10.1371/journal.pone.0138162","title":"Transcriptome Analysis of Poplar during Leaf Spot Infection with Sphaerulina spp.","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Forest Service; Natural Resources Canada","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Phenylpropanoid; Pathogen; Canker; Transcriptome; Botany; Host (biology); Inoculation; Magnoliaceae; Gene; Flavonoid biosynthesis; Woody plant; Salicaceae; Fungus; Horticulture; Gene expression; Microbiology; Genetics; Biosynthesis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001004424,0.00007346499,0.0002038892,0.0000401225,0.00007424246,0.00001927404,0.00007649482,0.00003964335,0.0003184257],"category_scores_gemma":[0.00001887189,0.00002860753,0.0000646455,0.0006479908,0.00002570087,0.0001545307,0.00001321358,0.00009593525,0.00002289733],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000237184,"about_ca_system_score_gemma":0.000004269909,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002168762,"about_ca_topic_score_gemma":0.002918894,"domain_scores_codex":[0.9994344,0.00004115007,0.0001381013,0.0001149246,0.0001525196,0.0001189734],"domain_scores_gemma":[0.9996867,0.00002713615,0.00006997592,0.00004967564,0.0001070338,0.00005948765],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009749009,0.0006359488,0.07608353,0.000007586093,0.0004588022,0.000001860756,0.0000684361,0.00002443481,0.92242,0.000005138812,0.00001431186,0.0001824811],"study_design_scores_gemma":[0.0002033005,0.000362154,0.6528025,0.00005926046,0.0007241106,0.000005757009,0.0001653069,0.0001257534,0.3449552,0.000009698409,0.0004566512,0.0001302708],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990644,0.00004538286,0.000003057994,0.0001337294,0.00001884475,0.00006853734,0.00005184797,0.00003346074,0.000580679],"genre_scores_gemma":[0.9993697,0.00004666342,0.00008359605,0.00001741663,0.00003738611,0.000003797893,0.0000790329,5.463261e-7,0.0003618637],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5774648,"threshold_uncertainty_score":0.3486539,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05064659214819005,"score_gpt":0.2139747375093459,"score_spread":0.1633281453611559,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}