{"id":"W1767308489","doi":"10.1038/emboj.2011.5","title":"Linkage between the bacterial acid stress and stringent responses: the structure of the inducible lysine decarboxylase","year":2011,"lang":"en","type":"article","venue":"The EMBO Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":176,"is_retracted":false,"has_abstract":false,"ca_institutions":"Princess Margaret Cancer Centre; Ontario Institute for Cancer Research; University of Toronto","funders":"Canadian Institutes of Health Research; National Institutes of Health; Université de Sherbrooke; Natural Sciences and Engineering Research Council of Canada; University of Oklahoma","keywords":"Lysine decarboxylase; Biology; Lysine; Biochemistry; Stringent response; Escherichia coli; Effector; Enzyme; Antiporter; Amino acid; Cadaverine; Membrane; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001707399,0.0002542589,0.0002992552,0.0001563663,0.0002934498,0.0008287695,0.0005032559,0.0004484333,0.0005523394],"category_scores_gemma":[0.0002193856,0.0002599343,0.0002145641,0.0001720993,0.0006087996,0.0007344329,0.0002674578,0.0009817965,0.0003304815],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000593887,"about_ca_system_score_gemma":0.0004275852,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003901344,"about_ca_topic_score_gemma":0.0003234359,"domain_scores_codex":[0.9999585,0.000005245676,0.000002426123,0.00001682792,0.000008278461,0.000008752584],"domain_scores_gemma":[0.9998827,0.00001455339,0.00002863013,0.00002152891,0.00001778682,0.00003484457],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006087093,0.00008485426,0.001258885,0.00007533324,0.00001594357,0.0002789554,0.000098429,0.001729839,0.9662858,0.01470794,0.0002559432,0.01459955],"study_design_scores_gemma":[0.0001231413,0.001201883,0.01467869,0.0000264975,0.00005661244,0.001049834,0.0002017465,0.01012904,0.934395,0.02105377,0.01701659,0.00006709411],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.969837,0.005350434,0.01851928,0.001336847,0.0001638326,0.00003217259,0.0001743172,0.0001490022,0.004437138],"genre_scores_gemma":[0.9884363,0.001399831,0.006117699,0.0002392071,0.00008169376,0.00001839708,0.0004352021,0.00002416522,0.003247531],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008287695,"threshold_uncertainty_score":0.004308939,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01751401717082606,"score_gpt":0.2299988889523687,"score_spread":0.2124848717815426,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}