{"id":"W1767592711","doi":"10.1002/9780471729259.mc12c05s34","title":"Molecular Typing of<i>Borrelia burgdorferi</i>","year":2014,"lang":"en","type":"article","venue":"Current Protocols in Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":61,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Borrelia burgdorferi; Biology; Borrelia; Lyme disease; Sensu; Typing; Microbiology; Spirochaetaceae; Multilocus sequence typing; Virology; Genetics; Genotype; Genus; Gene; Zoology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009964828,0.0006899458,0.0003808478,0.002024208,0.0002139508,0.0007572789,0.0004189314,0.0005671484,0.0007556151],"category_scores_gemma":[0.001486244,0.0002441166,0.000485759,0.0008808387,0.0003276418,0.000319958,0.0003688818,0.0004264251,0.001029309],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002263908,"about_ca_system_score_gemma":0.0002996764,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000875436,"about_ca_topic_score_gemma":0.0008221568,"domain_scores_codex":[0.9986435,0.0002727163,0.000239648,0.0003625542,0.0003442104,0.0001374947],"domain_scores_gemma":[0.9991946,0.0001847902,0.0002558264,0.00007392343,0.0002259952,0.00006487982],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001137025,0.00006525363,0.01262606,0.0002209789,0.00001442852,0.0001360298,0.0001933001,0.000177809,0.95461,0.0002072149,0.0005327916,0.03110233],"study_design_scores_gemma":[0.00002503819,0.0009775714,0.09491753,0.0002295955,0.0001342965,0.002106708,0.0004496772,0.001488695,0.8735322,0.0003368269,0.02574433,0.00005752106],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.9059648,0.008802869,0.06381386,0.0007919734,0.0002991633,0.0007149598,0.007471411,0.0008466557,0.01129433],"genre_scores_gemma":[0.790203,0.01106122,0.1725327,0.0005471344,0.0002142014,0.0006859854,0.01967039,0.0001383933,0.004947024],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.002024208,"threshold_uncertainty_score":0.005270004,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0164465192152786,"score_gpt":0.2984632142755329,"score_spread":0.2820166950602542,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}