{"id":"W1767592711","doi":"10.1002/9780471729259.mc12c05s34","title":"Molecular Typing of<i>Borrelia burgdorferi</i>","year":2014,"lang":"en","type":"article","venue":"Current Protocols in Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":61,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Borrelia burgdorferi; Biology; Borrelia; Lyme disease; Sensu; Typing; Microbiology; Spirochaetaceae; Multilocus sequence typing; Virology; Genetics; Genotype; Genus; Gene; Zoology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004061103,0.0002869222,0.0005628252,0.0002447659,0.00006113423,0.000008862897,0.0004447997,0.0003150368,0.0003026551],"category_scores_gemma":[0.0003143508,0.0002734652,0.0001621357,0.0002696901,0.0004106995,0.00006105162,0.0001924415,0.0004530716,0.0003974883],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006503174,"about_ca_system_score_gemma":0.0001000562,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002959852,"about_ca_topic_score_gemma":0.000015707,"domain_scores_codex":[0.9976799,0.0006148688,0.000629076,0.000505891,0.00001625631,0.0005540148],"domain_scores_gemma":[0.9989153,0.0001605332,0.0002659588,0.0005184167,0.000110478,0.0000293242],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001419513,0.0004344825,0.02768245,0.000162504,0.00005293802,0.000001619355,0.00006551611,0.00004826862,0.9535545,0.003843518,0.001276073,0.0127362],"study_design_scores_gemma":[0.003793677,0.0006222909,0.007757221,0.000524794,0.00004097098,0.000108034,0.00001906991,0.00001065188,0.5492531,0.001056347,0.4362399,0.0005739557],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9509395,0.003960004,0.002960151,0.0001007273,0.002185401,0.03779578,0.0001145328,0.0002441498,0.001699804],"genre_scores_gemma":[0.982126,0.00001851554,0.00007227751,0.0001348255,0.00004426418,0.01738023,0.000152691,0.00003297001,0.00003825395],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4349638,"threshold_uncertainty_score":0.9999717,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0164465192152786,"score_gpt":0.2984632142755329,"score_spread":0.2820166950602542,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}