{"id":"W1782853088","doi":"10.1186/1471-2164-15-1132","title":"The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola","year":2014,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Wheat and Barley Genetics and Pathology","field":"Agricultural and Biological Sciences","cited_by":76,"is_retracted":false,"has_abstract":true,"ca_institutions":"Natural Resources Canada; University of British Columbia","funders":"Joint Genome Institute; Genome Canada; U.S. Department of Agriculture; U.S. Department of Energy","keywords":"Mycosphaerella graminicola; Biology; Genome; Genetics; Graminicola; Transposable element; Gene; Genome project; Gene density; Genome evolution; Genome size","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000800733,0.00009465258,0.0001515956,0.000004641774,0.0001627154,0.0000216859,0.0006231912,0.00007291215,0.00003373853],"category_scores_gemma":[0.00002138721,0.00002461344,0.0001149121,0.0001605109,0.00008805856,0.00001047036,0.00005165225,0.00008924741,0.000003721507],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004792022,"about_ca_system_score_gemma":0.00001527382,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000306775,"about_ca_topic_score_gemma":0.002513479,"domain_scores_codex":[0.9989693,0.0002214068,0.0003179218,0.0001417984,0.0001304188,0.0002192171],"domain_scores_gemma":[0.9993867,0.0003048501,0.0001114381,0.0001438961,0.00003054342,0.0000225987],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001078619,0.0001572031,0.3503773,0.00002284044,0.00001455154,7.356497e-7,0.0009159789,0.0001788217,0.6322575,0.001436145,0.0002177587,0.01431338],"study_design_scores_gemma":[0.0005821888,0.000725446,0.9282041,0.00001243694,0.00004228102,0.000008465626,0.001117899,0.0006494153,0.01296979,0.002508017,0.05298469,0.0001952341],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973763,0.0004730601,0.000003242152,0.0003549029,0.0001258563,0.0002588699,0.00007376061,0.000002751678,0.001331224],"genre_scores_gemma":[0.999307,0.0002370974,0.00007988488,0.0001245458,0.0001077291,0.00001075479,0.00001821621,0.000001084332,0.000113645],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6192877,"threshold_uncertainty_score":0.140258,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01666429787629334,"score_gpt":0.2017878880315493,"score_spread":0.1851235901552559,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}