{"id":"W1785842681","doi":"10.1152/ajpgi.00053.2015","title":"Selective enrichment of commensal gut bacteria protects against<i>Citrobacter rodentium</i>-induced colitis","year":2015,"lang":"en","type":"article","venue":"American Journal of Physiology-Gastrointestinal and Liver Physiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Citrobacter rodentium; Microbiology; Biology; Dysbiosis; Citrobacter; Gut flora; Immune system; Colitis; Pathogen; Immunology; Escherichia coli; Enterobacteriaceae","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001927395,0.0004564897,0.000422128,0.0002303577,0.0001371264,0.0003122301,0.0002196552,0.0002491767,0.0006838099],"category_scores_gemma":[0.0002028233,0.000142949,0.0001937827,0.0001043247,0.0002245426,0.0001942683,0.0002559393,0.0005476982,0.0001716106],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001518257,"about_ca_system_score_gemma":0.000264056,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004165384,"about_ca_topic_score_gemma":0.0008091631,"domain_scores_codex":[0.9998077,0.00004711316,0.00002032992,0.00003497369,0.00002964588,0.00006019277],"domain_scores_gemma":[0.9997383,0.00002369431,0.00007716085,0.0000322135,0.00002353578,0.0001052167],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008508262,0.0001790604,0.0003693448,0.00004587495,0.00000845892,0.00002749492,0.00001135984,0.00004036276,0.9957646,0.0000259349,0.00003086297,0.002645795],"study_design_scores_gemma":[0.00006680581,0.005548798,0.01256444,0.00003181304,0.000039808,0.000259992,0.0000656646,0.0003108811,0.9797763,0.00004400402,0.001281421,0.00001018678],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972697,0.001142625,0.0007038959,0.0001040717,0.00002485404,0.00001842955,0.0001059642,0.00005447233,0.0005759662],"genre_scores_gemma":[0.9968935,0.0006408714,0.001331989,0.00009150258,0.00001214394,0.00002239728,0.0002296414,0.00002084743,0.0007570239],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006838099,"threshold_uncertainty_score":0.002287567,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01194941089739761,"score_gpt":0.2424807210034483,"score_spread":0.2305313101060507,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}