{"id":"W1792229740","doi":"10.1111/j.1462-2920.2005.00918.x","title":"Lateral gene transfer and phylogenetic assignment of environmental fosmid clones","year":2005,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Genome Atlantic","keywords":"Fosmid; Biology; Gene transfer; Phylogenetic tree; Horizontal gene transfer; Gene; Genetics; Phylogenetics; Evolutionary biology; Computational biology; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004566943,0.0003113143,0.0002895349,0.001195093,0.000250632,0.0005704223,0.0002471655,0.0003167339,0.001203225],"category_scores_gemma":[0.001903759,0.0002451511,0.0003030471,0.0007756556,0.0003379906,0.0004055734,0.0006189618,0.0005246501,0.0005854225],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000403794,"about_ca_system_score_gemma":0.0002228479,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009335882,"about_ca_topic_score_gemma":0.001280877,"domain_scores_codex":[0.9996582,0.00004411407,0.0000363156,0.0001108827,0.0001043829,0.00004599894],"domain_scores_gemma":[0.9989623,0.0003930413,0.000242945,0.000117173,0.0002062058,0.00007826927],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001141192,0.00002349307,0.006872609,0.00006541548,0.0000081034,0.00007730509,0.0002021153,0.0001366594,0.9844653,0.0001685392,0.00001177927,0.007854674],"study_design_scores_gemma":[0.00002159238,0.000514721,0.1511277,0.00005967944,0.00005662592,0.0006800896,0.0005246965,0.004142367,0.8382956,0.0003849076,0.004164096,0.00002792466],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9813131,0.0003294998,0.01619634,0.0000360883,0.000008221377,0.00008537047,0.0006761512,0.00007438685,0.001280889],"genre_scores_gemma":[0.9522782,0.000654885,0.04139916,0.00005885678,0.00001380908,0.0001454667,0.003399228,0.00007993101,0.00197051],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001203225,"threshold_uncertainty_score":0.004025221,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.002870841826018447,"score_gpt":0.1703212772403691,"score_spread":0.1674504354143507,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}