{"id":"W1804740371","doi":"10.1186/1471-2105-7-462","title":"Java GUI for InterProScan (JIPS): A tool to help process multiple InterProScans and perform ortholog analysis","year":2006,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; U.S. Public Health Service; National Institutes of Health","keywords":"Java; Computer science; Biological database; Function (biology); Data mining; DNA microarray; Process (computing); Computational biology; Database; Bioinformatics; Biology; Gene; Genetics; Programming language","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002508893,0.00333779,0.001676212,0.002912954,0.0007930989,0.001615388,0.004051941,0.001471443,0.05363283],"category_scores_gemma":[0.005389291,0.001569005,0.001405109,0.001379429,0.0005805334,0.00252828,0.00250756,0.002681588,0.02922448],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005891364,"about_ca_system_score_gemma":0.001228672,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002476189,"about_ca_topic_score_gemma":0.002764625,"domain_scores_codex":[0.9989171,0.0001896667,0.0001556156,0.0002058668,0.0004048001,0.0001269535],"domain_scores_gemma":[0.996296,0.001928132,0.0003113337,0.0004282958,0.0006640765,0.0003722468],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003032495,0.0007209852,0.00538181,0.002850563,0.0005729814,0.002004733,0.0009367706,0.004291651,0.092012,0.005734088,0.4351449,0.447317],"study_design_scores_gemma":[0.001918926,0.0007739856,0.01709665,0.0006936659,0.0004241742,0.005502958,0.0002788446,0.1523623,0.1667812,0.0210157,0.632146,0.001005696],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.002300999,0.0002937336,0.4738083,0.000219638,0.0001409673,0.0002444094,0.005394799,0.5148655,0.002731574],"genre_scores_gemma":[0.02952806,0.0008451585,0.8182592,0.0009424352,0.0001607298,0.001585353,0.02870866,0.1058536,0.01411683],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.05363283,"threshold_uncertainty_score":0.1794197,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005128141935829156,"score_gpt":0.244131908550931,"score_spread":0.2390037666151018,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}