{"id":"W1828245229","doi":"10.1139/g2012-009","title":"Genome-wide analysis of the MADS-box gene family in cucumber","year":2012,"lang":"en","type":"article","venue":"Genome","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":137,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"MADS-box; Biology; Genome; Gene; Genetics; Gene family; Gene duplication; Tandem exon duplication; Arabidopsis; Gene expression profiling; Phylogenetic tree; Computational biology; Gene expression","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004118554,0.0000843509,0.0001943374,0.0000390999,0.00005851444,0.000008623722,0.0004029281,0.00008636537,0.0002778738],"category_scores_gemma":[0.00003781634,0.00002704842,0.0001231649,0.001215212,0.00007740268,0.00003480719,0.0001851506,0.0001124224,0.00005873805],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002638278,"about_ca_system_score_gemma":0.000006726831,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003773702,"about_ca_topic_score_gemma":0.0007251857,"domain_scores_codex":[0.9989519,0.0001544355,0.0001733211,0.0001646861,0.0001711819,0.0003845288],"domain_scores_gemma":[0.9996421,0.0001007627,0.00005558304,0.0001031796,0.00002829206,0.00007009821],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000004800175,0.00002515171,0.3819134,6.570662e-7,0.00005483,0.000001115974,0.0000337568,0.00001470334,0.6177633,0.000007867214,0.000004578344,0.0001758991],"study_design_scores_gemma":[0.00003980351,0.00002074402,0.989378,8.950846e-7,0.00004265664,0.000001633866,0.00003944916,0.000006759834,0.00364085,0.00002063573,0.006737051,0.00007146155],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971039,0.001103378,0.000002670545,0.0003109555,0.00003792533,0.0001282228,0.00008993784,0.000007611613,0.001215419],"genre_scores_gemma":[0.9991416,0.00007109484,0.00002951306,0.0002600364,0.00005678485,0.00000934121,0.0001006588,5.824965e-7,0.0003303687],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6141224,"threshold_uncertainty_score":0.3042524,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02466538065504126,"score_gpt":0.2415935012224104,"score_spread":0.2169281205673692,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}