{"id":"W1828454416","doi":"10.1089/aid.2015.0035","title":"Intrapatient Evolutionary Dynamics of Human Immunodeficiency Virus Type 1 in Individuals Undergoing Alternative Treatment Strategies with Reverse Transcriptase Inhibitors","year":2015,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"European and Developing Countries Clinical Trials Partnership; Medical Research Council; Wellcome Trust","keywords":"Reverse transcriptase; Genome; Virology; Human immunodeficiency virus (HIV); Antiretroviral therapy; Virus; Gene; Lineage (genetic); Biology; Viral load; Medicine; Genetics; Polymerase chain reaction","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005867029,0.0002304396,0.0003643045,0.0007074852,0.000380256,0.00005587769,0.0002192632,0.000130948,0.000127564],"category_scores_gemma":[0.00007603135,0.0001714182,0.00004650263,0.0004629041,0.001239262,0.0002997137,0.00009856782,0.0004071743,0.00005302208],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006010105,"about_ca_system_score_gemma":0.0006417372,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01028903,"about_ca_topic_score_gemma":0.005871073,"domain_scores_codex":[0.9977233,0.000521873,0.0003712951,0.0004068803,0.0002805184,0.0006961647],"domain_scores_gemma":[0.99898,0.0001977022,0.00008858871,0.0003014493,0.0003204113,0.0001117947],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001601966,0.004040912,0.8526845,0.0001192938,0.0008700404,0.0001623543,0.01016417,0.0000508803,0.0693593,0.05697011,0.001070076,0.002906399],"study_design_scores_gemma":[0.04026068,0.2483462,0.4589916,0.001227948,0.0002177422,0.0001292827,0.1061884,0.00001207961,0.1039092,0.03296464,0.006076895,0.001675337],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943027,0.003056112,0.000007427344,0.00004433792,0.00005573694,0.0005344528,0.0002894447,0.00002344453,0.001686282],"genre_scores_gemma":[0.9983435,0.0004407194,0.00007644802,0.000005576809,0.00001524278,0.00006328448,0.0004603961,0.00001982154,0.0005750225],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3936929,"threshold_uncertainty_score":0.9963015,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07728582912592326,"score_gpt":0.35096061489688,"score_spread":0.2736747857709567,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}