{"id":"W1828454416","doi":"10.1089/aid.2015.0035","title":"Intrapatient Evolutionary Dynamics of Human Immunodeficiency Virus Type 1 in Individuals Undergoing Alternative Treatment Strategies with Reverse Transcriptase Inhibitors","year":2015,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"European and Developing Countries Clinical Trials Partnership; Medical Research Council; Wellcome Trust","keywords":"Reverse transcriptase; Genome; Virology; Human immunodeficiency virus (HIV); Antiretroviral therapy; Virus; Gene; Lineage (genetic); Biology; Viral load; Medicine; Genetics; Polymerase chain reaction","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004021165,0.0001885735,0.0003274491,0.0005481275,0.0004807731,0.0005682893,0.0002558269,0.0005203732,0.0005914707],"category_scores_gemma":[0.002387674,0.000163537,0.0001802669,0.0003948187,0.0003132289,0.0004300821,0.00031532,0.0004819735,0.0000891586],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002736768,"about_ca_system_score_gemma":0.0001379995,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006862679,"about_ca_topic_score_gemma":0.0008742273,"domain_scores_codex":[0.9997267,0.00009376795,0.00002140247,0.00006130212,0.00004522221,0.00005158927],"domain_scores_gemma":[0.9993442,0.0002240627,0.0002303122,0.00003928519,0.00004919597,0.000113009],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005544906,0.0001174185,0.9753696,0.00001478695,0.00003512623,0.002728391,0.0007787474,0.0004678798,0.008134151,0.0001511359,0.00007248703,0.01157572],"study_design_scores_gemma":[0.00002229405,0.001113402,0.9795182,0.00001295076,0.00005904611,0.01264804,0.001091618,0.002601062,0.002041186,0.000294388,0.0005762528,0.0000215252],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997279,0.00007445844,0.00006141512,0.00001929198,7.975443e-7,0.000001881207,0.000008747361,0.000001007057,0.0001044091],"genre_scores_gemma":[0.9997748,0.00004399379,0.00008562607,0.00001732074,0.000004266691,0.000002120578,0.00002790177,0.000001465094,0.00004240334],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006862679,"threshold_uncertainty_score":0.002126634,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07728582912592326,"score_gpt":0.35096061489688,"score_spread":0.2736747857709567,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}