{"id":"W1832784998","doi":"10.1111/mpp.12228","title":"Rapid identification of the <i> <scp>L</scp> eptosphaeria maculans </i> avirulence gene <i> <scp>AvrLm2</scp> </i> using an intraspecific comparative genomics approach","year":2014,"lang":"en","type":"article","venue":"Molecular Plant Pathology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":114,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; University of Manitoba; Agriculture and Agri-Food Canada","funders":"South Carolina Department of Commerce; Western Grains Research Foundation","keywords":"Biology; Genetics; Leptosphaeria maculans; Gene; Complementation; Genome; Virulence; Coding region; Genomics; Phenotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005720441,0.0002601966,0.0003758022,0.00003071067,0.000352705,0.00008050773,0.0007329152,0.0002007276,0.00001088162],"category_scores_gemma":[0.0001127792,0.0001237003,0.0001476398,0.0002898854,0.0002477085,0.0001596499,0.0001646215,0.0003318736,0.00002563149],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004318173,"about_ca_system_score_gemma":0.00001958441,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006638333,"about_ca_topic_score_gemma":0.00007427458,"domain_scores_codex":[0.9976369,0.0007775177,0.0005206225,0.0004771594,0.0001843698,0.0004034117],"domain_scores_gemma":[0.998731,0.0003124789,0.0004568325,0.0002922087,0.0001162753,0.0000911666],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000003723091,0.0002326209,0.0002201027,0.000006509774,0.00002236955,0.000007006282,0.0005185318,0.0004138805,0.9971359,0.0002973916,0.0002310455,0.0009109481],"study_design_scores_gemma":[0.0001774472,0.0001552637,0.01897409,0.00001316424,0.00005228736,0.0006373579,0.001198502,0.004965266,0.9588417,0.0001267438,0.01478237,0.000075754],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937466,0.0002943182,0.003613865,0.00002952811,0.0002921981,0.000329274,0.0006943128,0.00004039576,0.0009594647],"genre_scores_gemma":[0.9971707,0.0001117007,0.001302612,0.0003194312,0.0001268708,0.00001783204,0.0008791296,0.000004030962,0.00006765679],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03829412,"threshold_uncertainty_score":0.5044351,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03289874602976745,"score_gpt":0.2252094443363576,"score_spread":0.1923106983065901,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}