{"id":"W1834965369","doi":"10.3389/fmicb.2015.00936","title":"Culturing oil sands microbes as mixed species communities enhances ex situ model naphthenic acid degradation","year":2015,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Petroleum Processing and Analysis","field":"Chemistry","cited_by":40,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Genome Canada","keywords":"Naphthenic acid; Oil sands; Tailings; Biofilm; Microbial population biology; Population; Degradation (telecommunications); Microorganism; Microbial biodegradation; Enrichment culture; Environmental chemistry; Chemistry; Biodegradation; Biology; Bioremediation; Microbiology; Bacteria; Ecology; Contamination; Asphalt; Organic chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002830734,0.0005702073,0.0004199266,0.0001533603,0.0001486058,0.0004926111,0.0002275101,0.000353945,0.0006274323],"category_scores_gemma":[0.0003041736,0.0001501594,0.0003056586,0.0001396039,0.0001593957,0.0003832408,0.0005546649,0.0004906703,0.0002443987],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001506743,"about_ca_system_score_gemma":0.0002100024,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008209329,"about_ca_topic_score_gemma":0.002505018,"domain_scores_codex":[0.9997182,0.00004070471,0.00002280394,0.00007905465,0.00008933853,0.00004980092],"domain_scores_gemma":[0.9998597,0.00003472911,0.00003644335,0.00001124909,0.00003485374,0.00002298984],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000321468,0.00002972912,0.0002088094,0.00003669337,0.000003137744,0.00001934996,0.00002156821,0.00004283419,0.9987746,0.00001083872,0.000008750495,0.0008116537],"study_design_scores_gemma":[0.000003542979,0.0005769732,0.002791589,0.000008437947,0.00001597541,0.00006286109,0.00009588015,0.0007005752,0.9950687,0.00002165103,0.0006481864,0.000005682306],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953945,0.0003910756,0.002761063,0.00005321771,0.00001923641,0.00006194103,0.0003104675,0.00003929649,0.000969356],"genre_scores_gemma":[0.9832888,0.0009775682,0.01346374,0.0000507538,0.00001327484,0.0001042475,0.0004669843,0.00002265376,0.001612146],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9991791,"threshold_uncertainty_score":0.002098978,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02023991966491899,"score_gpt":0.2331790504470258,"score_spread":0.2129391307821069,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}